Results 71 to 80 of about 20,056,738 (185)

Hi-C contact map of the chromosomal pseudomolecules SOL_r2.0_pseudomolecule.

Hi-C contact map of the chromosomal pseudomolecules SOL_r2.0_pseudomolecule.
Yutaka Suzuki (1379), Atsushi Toyoda (24202), Takayuki Osabe (6933074), Babil Pachakkil (9943091), Keisuke Tanaka (810441), Akane Haseda (3316443), Yuki Sudo (163292), Hideki Hirakawa (103059), Kaoru Yamano (18018230), Keisuke Iwabuchi (18018233), Yasuyuki Onodera (3316440)   +10 more
core   +1 more source

Hi-PACE/hipace: v22.12

, 2022
Dependencies AMReX: release 22.12 openPMD-api: release 0.14.5 What's Changed Update version number before release by @MaxThevenet in https://github.com/Hi-PACE/hipace/pull/812 Fix invalid CUDA device function error in HPMG by @AlexanderSinn in https ...
Lehe, Remi, Sinn, Alexander, Diederichs, Severin, Zhang, Weiqun, Huebl, Axel, Myers, Andrew, Thévenet, Maxence   +6 more
core   +1 more source

Inferring chromosome radial organization from Hi-C data

BMC Bioinformatics, 2020
Background The nonrandom radial organization of eukaryotic chromosome territories (CTs) inside the nucleus plays an important role in nuclear functional compartmentalization. Increasingly, chromosome conformation capture (Hi-C) based approaches are being
Priyojit Das, Tongye Shen, Rachel Patton McCord   +2 more
doaj   +1 more source

Hi-PACE/hipace: v22.09

, 2022
Dependencies AMReX: release 22.09 openPMD-api: release 0.14.5 What's Changed Fix adaptive time step by @SeverinDiederichs in https://github.com/Hi-PACE/hipace/pull/771 ensure that argument of sqrt in adaptive time step is positive by @SeverinDiederichs ...
Lehe, Remi, Sinn, Alexander, Diederichs, Severin, Zhang, Weiqun, Huebl, Axel, Myers, Andrew, Thévenet, Maxence   +6 more
core   +1 more source

Wheat chromatin architecture is organized in genome territories and transcription factories

Genome Biology, 2020
Background Polyploidy is ubiquitous in eukaryotic plant and fungal lineages, and it leads to the co-existence of several copies of similar or related genomes in one nucleus.
Lorenzo Concia, Alaguraj Veluchamy, Juan S. Ramirez-Prado, Azahara Martin-Ramirez, Ying Huang, Magali Perez, Severine Domenichini, Natalia Y. Rodriguez Granados, Soonkap Kim, Thomas Blein, Susan Duncan, Clement Pichot, Deborah Manza-Mianza, Caroline Juery, Etienne Paux, Graham Moore, Heribert Hirt, Catherine Bergounioux, Martin Crespi, Magdy M. Mahfouz, Abdelhafid Bendahmane, Chang Liu, Anthony Hall, Cécile Raynaud, David Latrasse, Moussa Benhamed   +25 more
doaj   +1 more source

Correction: MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments.

PLoS Computational Biology, 2022
[This corrects the article DOI: 10.1371/journal.pcbi.1010241.].
Hamid Alinejad-Rokny, Rassa Ghavami Modegh, Hamid R Rabiee, Ehsan Ramezani Sarbandi, Narges Rezaie, Kin Tung Tam, Alistair R R Forrest   +6 more
doaj   +1 more source

Hi-PACE/hipace: v22.07

, 2022
Dependencies AMReX: release 22.07 openPMD-api: release 0.14.5 What's Changed Fix debug crash from empty multifab by @AlexanderSinn in https://github.com/Hi-PACE/hipace/pull/752 [mini] gpu synchronize after beam particle sort per slice by ...
Lehe, Remi, Sinn, Alexander, Diederichs, Severin, Zhang, Weiqun, Huebl, Axel, Myers, Andrew, Thévenet, Maxence   +6 more
core   +1 more source

MetaTOR: A Computational Pipeline to Recover High-Quality Metagenomic Bins From Mammalian Gut Proximity-Ligation (meta3C) Libraries

Frontiers in Genetics, 2019
Characterizing the complete genomic structure of complex microbial communities would represent a key step toward the understanding of their diversity, dynamics, and evolution.
Lyam Baudry, Lyam Baudry, Lyam Baudry, Théo Foutel-Rodier, Théo Foutel-Rodier, Théo Foutel-Rodier, Agnès Thierry, Agnès Thierry, Romain Koszul, Romain Koszul, Martial Marbouty, Martial Marbouty   +11 more
doaj   +1 more source

A Genome-wide hybrid incompatibility landscape between Caenorhabditis briggsae and C. nigoni. [PDF]

PLoS Genetics, 2015
Systematic characterization of ẖybrid incompatibility (HI) between related species remains the key to understanding speciation. The genetic basis of HI has been intensively studied in Drosophila species, but remains largely unknown in other species ...
Yu Bi, Xiaoliang Ren, Cheung Yan, Jiaofang Shao, Dongying Xie, Zhongying Zhao   +5 more
doaj   +1 more source

Principles of Chromosome Architecture Revealed by Hi-C [PDF]

Trends in Biochemical Sciences, 2018
Chromosomes are folded and compacted in interphase nuclei, but the molecular basis of this folding is poorly understood. Chromosome conformation capture methods, such as Hi-C, combine chemical crosslinking of chromatin with fragmentation, DNA ligation, and high-throughput DNA sequencing to detect neighboring loci genome-wide.
openaire   +2 more sources