Results 51 to 60 of about 18,851,748 (235)
Software tools for visualizing Hi-C data [PDF]
Genome Biology, 2016 Abstract Recently developed, high-throughput assays for measuring the three-dimensional configuration of DNA in the nucleus have provided unprecedented insights into the relationship between DNA 3D configuration and function. However, accurate interpretation of data from assays such as ChIA-PET and Hi-C is challenging because the data ...
Galip Gürkan Yardımcı +1 more
openaire +2 more sources
, 2021 Dependencies AMReX: release 22.01 openPMD-api: release 0.14.3 What's Changed Update doc on how to release by @MaxThevenet in https://github.com/Hi-PACE/hipace/pull/628 Remove 3D rendering from repo by @MaxThevenet in https://github.com/Hi-PACE/hipace ...
Lehe, Remi +6 more
core +1 more source
FEBS Letters, EarlyView.Biomolecular condensates formed by fused in sarcoma (FUS) are dissolved by high ATP concentrations yet persist in cells. Using a reconstituted system, we demonstrate that valosin‐containing protein (VCP), an AAA+ ATPase, counteracts ATP‐driven dissolution of FUS condensates through its D2 ATPase activity.
Hitomi Kimura +2 more
wiley +1 more source
, 2022 #For HiC: #install Juicer as introduced as https://github.com/aidenlab/juicer based on your cluster type. #Run: juicer.sh -g hg19 -s MboI #Call Loops juicebox hiccups -m 512 -k KR -r 5000,10000,25000 -f .2,.2,.2 -p 4,2,1 -i 7,5,3 -t 0.05,1.25,1.25,1.5 ...
Beisi Xu (6037520)
core +1 more source
Molecular Oncology, EarlyView.Single‐cell DNA methylation (scDNAme) profiling maps epimutational clonal evolution, revealing mechanisms of malignancy and therapeutic resistance across diverse cancer types. By providing a high‐resolution landscape of intratumoral heterogeneity, these technologies empower precise patient stratification, guide the development of enhanced ...
Ik Soo Kim
wiley +1 more source
, 2020 Technology advance during the past decade has greatly expanded our understanding of the higher-order structure of the genome. The various chromosome conformation capture (3C)-based techniques such as Hi-C have provided the most widely used tools for interrogating three-dimensional (3D) genome organization. We recently developed a Hi-C variant, DNase Hi-
openaire +3 more sources
Anatomic Double Bundle Posterior Cruciate Ligament Reconstruction Using an Internal Splint
Arthroscopy Techniques, 2020 Techniques for reconstruction of posterior cruciate ligament (PCL) tears are rapidly evolving. One problem with current techniques is that laxity may develop early in the postoperative period, leading to relapsed posterior translation of the tibia ...
J. Banks Deal, Jr., M.D. +2 more
doaj +1 more source
FEBS Open Bio, EarlyView.Abruptly changing from aerobic to anaerobic conditions (sudden anaerobization) induced growth inhibition and a significant increase in intracellular labile ferrous iron in the aerotolerant anaerobe Amphibacillus xylanus. We found that free flavins mediate efficient electron transfer from NADH to ferric iron under anaerobic conditions, suggesting that ...
Shinya Kimata +13 more
wiley +1 more source
Aquaporin‐3 and aquaporin‐5 impact the development of pancreatic ductal adenocarcinoma spheroids
FEBS Open Bio, EarlyView.Schematic representation of the role of aquaporin‐3 (AQP3) and aquaporin‐5 (AQP5) in pancreatic ductal adenocarcinoma (PDAC). Both proteins are upregulated in PDAC and are associated with tumor progression and metastatic potential. Silencing AQP3 or AQP5 in PDAC spheroids results in decreased diameter, area, and overall growth, underscoring their key ...
Catarina Pimpão +3 more
wiley +1 more source
MaxHiC: robust estimation of chromatin interaction frequency in Hi-C and capture Hi-C experiments [PDF]
, 2020 Abstract Hi-C is a genome-wide chromosome conformation capture technology that detects interactions between pairs of genomic regions, and exploits higher order chromatin structures. Conceptually Hi-C data counts interaction frequencies between every position in the genome and every other position.
Alinejad-Rokny, Hamid +5 more
openaire +1 more source