Results 51 to 60 of about 20,056,738 (185)
Synteny and rearrangement alignments - Hi-C
, 2023 SyRI output files for all pairs of genome alignments for E. melliodora Hi-C analysis. Each file contains the syntenc and rearranged sequences between each pair of genomes.
Scott Ferguson (9952223)
core +1 more source
Anatomic Double Bundle Posterior Cruciate Ligament Reconstruction Using an Internal Splint
Arthroscopy Techniques, 2020 Techniques for reconstruction of posterior cruciate ligament (PCL) tears are rapidly evolving. One problem with current techniques is that laxity may develop early in the postoperative period, leading to relapsed posterior translation of the tibia ...
J. Banks Deal, Jr., M.D. +2 more
doaj +1 more source
MaxHiC: robust estimation of chromatin interaction frequency in Hi-C and capture Hi-C experiments [PDF]
, 2020 Abstract Hi-C is a genome-wide chromosome conformation capture technology that detects interactions between pairs of genomic regions, and exploits higher order chromatin structures. Conceptually Hi-C data counts interaction frequencies between every position in the genome and every other position.
Alinejad-Rokny, Hamid +5 more
openaire +1 more source
Performance and variable importance of enhancer and promoter Hi-C-top predictive models in ESCs.
, 2021 Predicted expression of the test subset of genes calculated by the models versus their measured expression by RNA-seq. Model performances are represented by the Pearson’s correlation (r) between predicted and measured expression values.
Alexandra Santanach (11379032) +6 more
core +1 more source
Massively multiplex single-cell Hi-C [PDF]
Nature Methods, 2017 We present single-cell combinatorial indexed Hi-C (sciHi-C), a method that applies combinatorial cellular indexing to chromosome conformation capture. In this proof of concept, we generate and sequence six sciHi-C libraries comprising a total of 10,696 single cells.
Vijay Ramani +8 more
openaire +2 more sources
, 2022 We also developed a separate version of MaxHiC to handle capture Hi-C libraries. In the capture Hi-C library, we are particularly interested to identify significant interactions that at least one end of interaction is baited (i.e., a capture region ...
Hamid Alinejad-Rokny (518381) +6 more
core +1 more source
Genome Biology, 2022 Background Chromatin contacts are essential for gene-expression regulation; however, obtaining a high-resolution genome-wide chromatin contact map is still prohibitively expensive owing to large genome sizes and the quadratic scale of pairwise data ...
Ruchi Lohia, Nathan Fox, Jesse Gillis
doaj +1 more source
Structural Refinement by Direct Mapping Reveals Assembly Inconsistencies near Hi-C Junctions
Plants, 2023 High-throughput chromosome conformation capture (Hi-C) is widely used for scaffolding in de novo assembly because it produces highly contiguous genomes, but its indirect statistical approach can introduce connection errors.
Luca Marcolungo +10 more
doaj +1 more source
, 2022 Dependencies AMReX: release 22.03 openPMD-api: release 0.14.4 What's Changed update fixed ppc beams and a few other things in documentation by @SeverinDiederichs in https://github.com/Hi-PACE/hipace/pull/661 fix typo in table in documentation by ...
Lehe, Remi +6 more
core +1 more source