Results 41 to 50 of about 14,864,540 (284)
Hi–C interaction graph analysis reveals the impact of histone modifications in chromatin shape
Applied Network Science, 2021 Chromosome conformation capture experiments such as Hi–C map the three-dimensional spatial organization of genomes in a genome-wide scale. Even though Hi–C interactions are not biased towards any of the histone modifications, previous analysis has ...
Emre Sefer
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GrapHi-C: graph-based visualization of Hi-C datasets
BMC Research Notes, 2018 Objectives Hi-C is a proximity-based ligation reaction used to detect regions of the genome that are close in 3D space (or “interacting”). Typically, results from Hi-C experiments (contact maps) are visualized as heatmaps or Circos plots.
Kimberly MacKay +2 more
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SRHiC: A Deep Learning Model to Enhance the Resolution of Hi-C Data
Frontiers in Genetics, 2020 Hi-C data is important for studying chromatin three-dimensional structure. However, the resolution of most existing Hi-C data is generally coarse due to sequencing cost.
Zhilan Li, Zhiming Dai, Zhiming Dai
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Vapour reactive distillation process for hydrogen production by hi decomposition from hi-i2-h2o solutions [PDF]
, 2008 In this contribution, a sequential and hierarchical approach for the feasibility analysis and the preliminary design of reactive distillation columns is extended to systems involving vapour phase chemical reaction and is successfully applied to the HI ...
X. Joulia +11 more
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eLife, 2014 Genomic analyses of microbial populations in their natural environment remain limited by the difficulty to assemble full genomes of individual species.
Martial Marbouty +5 more
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, 2023 Dependencies AMReX: release 23.07 openPMD-api: release 0.15.1 What's Changed Replace rho field with rho - jz/c by @AlexanderSinn in https://github.com/Hi-PACE/hipace/pull/940 CI: apt retry and new Easyinstall link by @AlexanderSinn in https://github.com/
Lehe, Remi +6 more
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Revisiting the use of structural similarity index in Hi-C [PDF]
Nature Genetics, 2021 Abstract Identification of dynamic changes in chromatin conformation is a fundamental task in genetics. In 2020, Galan et al. 1 presented CHESS (Comparison of Hi-C Experiments using Structural Similarity), a novel computational algorithm designed for systematic identification of ...
Hanjun Lee +3 more
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Frontiers in Genetics, 2023 Sericinus montelus (Lepidoptera, Papilionidae, Parnassiinae) is a high-value ornamental swallowtail butterfly species widely distributed in Northern and Central China, Japan, Korea, and Russia.
Jingjing Li +9 more
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, 2023 Hi-C with WT and U1U2-DKO E8.5 mouse hearts was performed. The NGS data are used for paper publication. The resourse is shared here for more researches.
Chen Li (14812087)
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Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation [PDF]
Methods, 2016 ABSTRACT Chromosome conformation capture-based methods such as Hi-C have become mainstream techniques for the study of the 3D organization of genomes. These methods convert chromatin interactions reflecting topological chromatin structures into digital information (counts of pair-wise interactions). Here, we describe an updated protocol
Houda Belaghzal +2 more
openaire +3 more sources