Results 41 to 50 of about 20,056,738 (185)
Genome Improvement and Core Gene Set Refinement of Fugacium kawagutii
Microorganisms, 2020 Cataloging an accurate functional gene set for the Symbiodiniaceae species is crucial for addressing biological questions of dinoflagellate symbiosis with corals and other invertebrates. To improve the gene models of Fugacium kawagutii, we conducted high-
Tangcheng Li +6 more
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Role of lamins in 3D genome organization and global gene expression
Nucleus, 2019 Genome-wide mapping of lamin-B1-genome interactions has shown that gene-poor and transcriptionally inactive genomic regions are associated with the nuclear lamina.
Youngjo Kim, Xiaobin Zheng, Yixian Zheng
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Overview of Hi-C and Capture Hi-C datasets presented in this study.
, 2023 Overview of Hi-C and Capture Hi-C datasets presented in this study.
Anne M. Molitor (8335128) +10 more
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HUGIn: Hi-C Unifying Genomic Interrogator [PDF]
Bioinformatics, 2017 Abstract Motivation High throughput chromatin conformation capture (3C) technologies, such as Hi-C and ChIA-PET, have the potential to elucidate the functional roles of non-coding variants. However, most of published genome-wide unbiased chromatin organization studies have used cultured cell ...
Joshua S. Martin +7 more
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A Multigraph-Based Representation of Hi-C Data
Genes, 2022 Chromatin–chromatin interactions and three-dimensional (3D) spatial structures are involved in transcriptional regulation and have a decisive role in DNA replication and repair. To understand how individual genes and their regulatory elements function within the larger genomic context, and how the genome reacts to environmental stimuli, the linear ...
Diána Makai +3 more
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Data for the HAdV55 RNA-seq and Hi-C
, 2023 Analysis data for the RNA-seq and Hi-C about adenovirus and A549 cells ...
Kaiying Wang (14583608)
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DeepHiC: A generative adversarial network for enhancing Hi-C data resolution.
PLoS Computational Biology, 2020 Hi-C is commonly used to study three-dimensional genome organization. However, due to the high sequencing cost and technical constraints, the resolution of most Hi-C datasets is coarse, resulting in a loss of information and biological interpretability ...
Hao Hong +14 more
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Software tools for visualizing Hi-C data [PDF]
Genome Biology, 2016 Abstract Recently developed, high-throughput assays for measuring the three-dimensional configuration of DNA in the nucleus have provided unprecedented insights into the relationship between DNA 3D configuration and function. However, accurate interpretation of data from assays such as ChIA-PET and Hi-C is challenging because the data ...
Galip Gürkan Yardımcı +1 more
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, 2020 Technology advance during the past decade has greatly expanded our understanding of the higher-order structure of the genome. The various chromosome conformation capture (3C)-based techniques such as Hi-C have provided the most widely used tools for interrogating three-dimensional (3D) genome organization. We recently developed a Hi-C variant, DNase Hi-
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