Results 21 to 30 of about 20,056,738 (185)

Energetics of Hi-C EUV brightenings [PDF]

Astronomy & Astrophysics, 2018
We study the thermal structure and energetics of the point-like extreme ultraviolet (EUV) brightenings within a system of fan loops observed in the active region AR 11520. These brightenings were simultaneously observed on 2012 July 11 by the High-resolution Coronal (Hi-C) imager and the Atmospheric Imaging Assembly (AIA) on board the Solar Dynamics ...
Srividya Subramanian, Vinay L. Kashyap, Durgesh Tripathi, Maria S. Madjarska, John G. Doyle   +4 more
openaire   +3 more sources

MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments.

PLoS Computational Biology, 2022
Hi-C is a genome-wide chromosome conformation capture technology that detects interactions between pairs of genomic regions and exploits higher order chromatin structures.
Hamid Alinejad-Rokny, Rassa Ghavami Modegh, Hamid R Rabiee, Ehsan Ramezani Sarbandi, Narges Rezaie, Kin Tung Tam, Alistair R R Forrest   +6 more
doaj   +1 more source

Hi-PACE/hipace: v22.02

, 2022
Dependencies AMReX: release 22.02 openPMD-api: release 0.14.3 What's Changed Include destructor of hipace in profiler by @AlexanderSinn in https://github.com/Hi-PACE/hipace/pull/639 Pass the number of ghost cells to amrex::MultiFab::setVal, etc.
Lehe, Remi, Sinn, Alexander, Diederichs, Severin, Zhang, Weiqun, Huebl, Axel, Myers, Andrew, Thévenet, Maxence   +6 more
core   +1 more source

Hi-C interaction map on GM12878 HiC data.

, 2022
Heatmap showing the raw read count of interactions at 5k bins of chr21 (36000kb to 39500kb) (same region as S10 Fig in the cLoops paper [43] on the GM12878 Hi-C dataset in Rao et al. [5]. The heatmap is colored based on the log of read count. Significant
Hamid Alinejad-Rokny (518381), Ehsan Ramezani Sarbandi (12937223), Rassa Ghavami Modegh (12937220), Alistair R. R. Forrest (11469502), Hamid R. Rabiee (5264216), Kin Tung Tam (12937226), Narges Rezaie (11991104)   +6 more
core   +1 more source

instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder

Genome Biology, 2020
Hi-C exploits contact frequencies between pairs of loci to bridge and order contigs during genome assembly, resulting in chromosome-level assemblies. Because few robust programs are available for this type of data, we developed instaGRAAL, a complete ...
Lyam Baudry, Nadège Guiglielmoni, Hervé Marie-Nelly, Alexandre Cormier, Martial Marbouty, Komlan Avia, Yann Loe Mie, Olivier Godfroy, Lieven Sterck, J. Mark Cock, Christophe Zimmer, Susana M. Coelho, Romain Koszul   +12 more
doaj   +1 more source

Cellular reprogramming is driven by widespread rewiring of promoter-enhancer interactions

BMC Biology, 2023
Background Long-range interactions between promoters and cis-regulatory elements, such as enhancers, play critical roles in gene regulation. However, the role of three-dimensional (3D) chromatin structure in orchestrating changes in transcriptional ...
Miao Wang, Bing He, Yueling Hao, Divyaa Srinivasan, Jatin Shrinet, Peter Fraser   +5 more
doaj   +1 more source

De novo assembly of a chromosome-level reference genome of the ornamental butterfly Sericinus montelus based on nanopore sequencing and Hi-C analysis

Frontiers in Genetics, 2023
Sericinus montelus (Lepidoptera, Papilionidae, Parnassiinae) is a high-value ornamental swallowtail butterfly species widely distributed in Northern and Central China, Japan, Korea, and Russia.
Jingjing Li, Jingjing Li, Haiyan Wang, Jianqing Zhu, Qi Yang, Yang Luan, Leming Shi, Leming Shi, José Arturo Molina-Mora, Yuanting Zheng   +9 more
doaj   +1 more source

Hi-C maps, 3D communities, and domains.

, 2023
(a) Hi-C maps where the red-to-blue pixel colors are a proxy for short-to-long 3D distances. The squares decorating the map’s diagonals represent GenLouvain-derived 3D communities for three γ values (0.5, 0.6, and 0.7).
Dolores Bernenko (16528426), Ludvig Lizana (2440240), Sang Hoon Lee (211083), Per Stenberg (36562)   +3 more
core   +1 more source

Hi–C interaction graph analysis reveals the impact of histone modifications in chromatin shape

Applied Network Science, 2021
Chromosome conformation capture experiments such as Hi–C map the three-dimensional spatial organization of genomes in a genome-wide scale. Even though Hi–C interactions are not biased towards any of the histone modifications, previous analysis has ...
Emre Sefer
doaj   +1 more source

Hi-C_E8.5_mouse_hearts_WT-DKO

, 2023
Hi-C with WT and U1U2-DKO E8.5 mouse hearts was performed. The NGS data are used for paper publication. The resourse is shared here for more researches.
Chen Li (14812087)
core   +1 more source