Results 31 to 40 of about 20,056,738 (185)
GrapHi-C: graph-based visualization of Hi-C datasets
BMC Research Notes, 2018 Objectives Hi-C is a proximity-based ligation reaction used to detect regions of the genome that are close in 3D space (or “interacting”). Typically, results from Hi-C experiments (contact maps) are visualized as heatmaps or Circos plots.
Kimberly MacKay +2 more
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SRHiC: A Deep Learning Model to Enhance the Resolution of Hi-C Data
Frontiers in Genetics, 2020 Hi-C data is important for studying chromatin three-dimensional structure. However, the resolution of most existing Hi-C data is generally coarse due to sequencing cost.
Zhilan Li, Zhiming Dai, Zhiming Dai
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Hi-C as a new technique for detecting large-scale SVs.
, 2023 (A) The expected alteration to chromatin interaction frequencies for different types of SVs. (B) The Hi-C map is shown a validated deletion event in K562 cell line.
Junping Li (614144) +2 more
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, 2022 Additional file 3: Table S2. Topologically Associating Domains (TADs) identified from this study. (A) TAD statistics of Hi-C, Micro-C, and promoter capture Micro-C data.
Zexun Wu (15169523) +2 more
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Influence of human peripheral blood samples preprocessing on the quality of Hi-C libraries
Вавиловский журнал генетики и селекции, 2023 The genome-wide variant of the chromatin conformation capture technique (Hi-C) is a powerful tool for revealing patterns of genome spatial organization, as well as for understanding the effects of their disturbance on disease development. In addition, Hi-
M. M. Gridina +8 more
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Revisiting the use of structural similarity index in Hi-C [PDF]
Nature Genetics, 2021 Abstract Identification of dynamic changes in chromatin conformation is a fundamental task in genetics. In 2020, Galan et al. 1 presented CHESS (Comparison of Hi-C Experiments using Structural Similarity), a novel computational algorithm designed for systematic identification of ...
Hanjun Lee +3 more
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eLife, 2014 Genomic analyses of microbial populations in their natural environment remain limited by the difficulty to assemble full genomes of individual species.
Martial Marbouty +5 more
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Modeling the 3D genome of plants
Nucleus, 2021 Chromosomes are the carriers of inheritable traits and define cell function and development. This is not only based on the linear DNA sequence of chromosomes but also on the additional molecular information they are associated with, including the ...
Marco Di Stefano, Hans-Wilhelm Nützmann
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Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation [PDF]
Methods, 2016 ABSTRACT Chromosome conformation capture-based methods such as Hi-C have become mainstream techniques for the study of the 3D organization of genomes. These methods convert chromatin interactions reflecting topological chromatin structures into digital information (counts of pair-wise interactions). Here, we describe an updated protocol
Houda Belaghzal +2 more
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, 2023 Dependencies AMReX: release 23.07 openPMD-api: release 0.15.1 What's Changed Replace rho field with rho - jz/c by @AlexanderSinn in https://github.com/Hi-PACE/hipace/pull/940 CI: apt retry and new Easyinstall link by @AlexanderSinn in https://github.com/
Lehe, Remi +6 more
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