Results 31 to 40 of about 18,851,748 (235)
GrapHi-C: graph-based visualization of Hi-C datasets
BMC Research Notes, 2018 Objectives Hi-C is a proximity-based ligation reaction used to detect regions of the genome that are close in 3D space (or “interacting”). Typically, results from Hi-C experiments (contact maps) are visualized as heatmaps or Circos plots.
Kimberly MacKay +2 more
doaj +1 more source
SRHiC: A Deep Learning Model to Enhance the Resolution of Hi-C Data
Frontiers in Genetics, 2020 Hi-C data is important for studying chromatin three-dimensional structure. However, the resolution of most existing Hi-C data is generally coarse due to sequencing cost.
Zhilan Li, Zhiming Dai, Zhiming Dai
doaj +1 more source
, 2022 Dependencies AMReX: release 22.02 openPMD-api: release 0.14.3 What's Changed Include destructor of hipace in profiler by @AlexanderSinn in https://github.com/Hi-PACE/hipace/pull/639 Pass the number of ghost cells to amrex::MultiFab::setVal, etc.
Lehe, Remi +6 more
core +1 more source
HI-FRIENDS participation in the SKA Data Challenge 2
, 2021 This repository contains the workflow used to find and characterize the HI sources in the data cube of the SKA Data Challenge 2. This is developed by the HI-FRIENDS team.
Darriba, Laura +23 more
core +2 more sources
Modeling the 3D genome of plants
Nucleus, 2021 Chromosomes are the carriers of inheritable traits and define cell function and development. This is not only based on the linear DNA sequence of chromosomes but also on the additional molecular information they are associated with, including the ...
Marco Di Stefano, Hans-Wilhelm Nützmann
doaj +1 more source
Genome Improvement and Core Gene Set Refinement of Fugacium kawagutii
Microorganisms, 2020 Cataloging an accurate functional gene set for the Symbiodiniaceae species is crucial for addressing biological questions of dinoflagellate symbiosis with corals and other invertebrates. To improve the gene models of Fugacium kawagutii, we conducted high-
Tangcheng Li +6 more
doaj +1 more source
Vapour reactive distillation process for hydrogen production by hi decomposition from hi-i2-h2o solutions [PDF]
, 2008 In this contribution, a sequential and hierarchical approach for the feasibility analysis and the preliminary design of reactive distillation columns is extended to systems involving vapour phase chemical reaction and is successfully applied to the HI ...
X. Joulia +11 more
core +1 more source
, 2023 Hi-C with WT and U1U2-DKO E8.5 mouse hearts was performed. The NGS data are used for paper publication. The resourse is shared here for more researches.
Chen Li (14812087)
core +1 more source
Revisiting the use of structural similarity index in Hi-C [PDF]
Nature Genetics, 2021 Abstract Identification of dynamic changes in chromatin conformation is a fundamental task in genetics. In 2020, Galan et al. 1 presented CHESS (Comparison of Hi-C Experiments using Structural Similarity), a novel computational algorithm designed for systematic identification of ...
Hanjun Lee +3 more
openaire +2 more sources
eLife, 2014 Genomic analyses of microbial populations in their natural environment remain limited by the difficulty to assemble full genomes of individual species.
Martial Marbouty +5 more
doaj +1 more source