Results 31 to 40 of about 938,732 (287)
Identifying and correcting repeat-calling errors in nanopore sequencing of telomeres
Genome Biology, 2022 Nanopore long-read sequencing is an emerging approach for studying genomes, including long repetitive elements like telomeres. Here, we report extensive basecalling induced errors at telomere repeats across nanopore datasets, sequencing platforms ...
Kar-Tong Tan +3 more
doaj +1 more source
Genome Analysis Methods using Long Read Nanopore Sequencing [PDF]
, 2021 Third-generation long-read technologies denote the latest progression in high throughput DNA and RNA sequence analysis. Complementing the widespread second-generation short-read platforms, long-read sequencing adds unique application opportunities by ...
Giesselmann, Pay +1 more
core +1 more source
Forensic SNP genotyping using nanopore MinION sequencing [PDF]
, 2017 One of the latest developments in next generation sequencing is the Oxford Nanopore Technologies' (ONT) MinION nanopore sequencer. We studied the applicability of this system to perform forensic genotyping of the forensic female DNA standard 9947 A using
Deforce, Dieter +4 more
core +1 more source
From squiggle to basepair: computational approaches for improving nanopore sequencing read accuracy
Genome Biology, 2018 Nanopore sequencing is a rapidly maturing technology delivering long reads in real time on a portable instrument at low cost. Not surprisingly, the community has rapidly taken up this new way of sequencing and has used it successfully for a variety of ...
Franka J. Rang +2 more
doaj +1 more source
cgMSI: pathogen detection within species from nanopore metagenomic sequencing data
BMC Bioinformatics, 2023 Background Metagenomic sequencing is an unbiased approach that can potentially detect all the known and unidentified strains in pathogen detection. Recently, nanopore sequencing has been emerging as a highly potential tool for rapid pathogen detection ...
Xu Zhu +5 more
doaj +1 more source
NanoSTR: A method for detection of target short tandem repeats based on nanopore sequencing data
Frontiers in Molecular Biosciences, 2023 Short tandem repeats (STRs) are widely present in the human genome. Studies have confirmed that STRs are associated with more than 30 diseases, and they have also been used in forensic identification and paternity testing.
Jidong Lang +4 more
doaj +1 more source
DNA Sequencing by Hexagonal Boron Nitride Nanopore: A Computational Study
Nanomaterials, 2016 The single molecule detection associated with DNA sequencing has motivated intensive efforts to identify single DNA bases. However, little research has been reported utilizing single-layer hexagonal boron nitride (hBN) for DNA sequencing.
Liuyang Zhang, Xianqiao Wang
doaj +1 more source
Genome Biology, 2021 Background Nanopore long-read sequencing technology greatly expands the capacity of long-range, single-molecule DNA-modification detection. A growing number of analytical tools have been developed to detect DNA methylation from nanopore sequencing reads.
Yang Liu +10 more
doaj +1 more source
Rapid diagnosis of intra-amniotic infection using nanopore-based sequencing
, 2023 Objectives: Early diagnosis and treatment of intra-amniotic infection is crucial. Rapid pathogen identification allows for a definite diagnosis and enables proper management.
Piroon Jenjaroenpun +31 more
core +1 more source
A world of opportunities with nanopore sequencing [PDF]
Journal of Experimental Botany, 2017 Oxford Nanopore Technologies' MinION sequencer was launched in pre-release form in 2014 and represents an exciting new sequencing paradigm. The device offers multi-kilobase reads and a streamed mode of operation that allows processing of reads as they are generated.
Richard M Leggett, Matthew D Clark
openaire +2 more sources