Results 31 to 40 of about 47,109 (297)

Nanopore sequencing in non-human forensic genetics [PDF]

, 2021
:The past decade has seen a rapid expansion of non-human forensic genetics coinciding with the development of 2nd and 3rd generation DNA sequencing technologies.
Vasiljevic, Nina, Ogden, Rob, Ogden, Rob; https://orcid.org/, Prost, Stefan, Vasiljevic, Nina; https://orcid.org/   +4 more
core   +1 more source

JXing-Lab/nanopore-sv-evaluation: Code and data [PDF]

, 2019
This release contains codes and data used for the publication "Evaluating nanopore sequencing data processing pipelines for structure variation identification".
Xing Lab of Genomics
core   +1 more source

Application of Oxford Nanopore sequencing for the study of marine biodiversity [PDF]

, 2023
reservedIl sequenziamento Oxford Nanopore ha permesso negli ultimi anni di migliorare le analisi metagenomiche, rendendo possibile l’identificazione di informazioni genetiche rilevanti dove le short reads avevano precedentemente fallito. In questo studio
CALLEGARO, ANDREA
core  

Metagenomic identification of severe pneumonia pathogens in mechanically-ventilated patients: a feasibility and clinical validity study

Respiratory Research, 2019
Background Metagenomic sequencing of respiratory microbial communities for pathogen identification in pneumonia may help overcome the limitations of culture-based methods. We examined the feasibility and clinical validity of rapid-turnaround metagenomics
Libing Yang, Ghady Haidar, Haris Zia, Rachel Nettles, Shulin Qin, Xiaohong Wang, Faraaz Shah, Sarah F. Rapport, Themoula Charalampous, Barbara Methé, Adam Fitch, Alison Morris, Bryan J. McVerry, Justin O’Grady, Georgios D. Kitsios   +14 more
doaj   +1 more source

Nanopore-based technologies beyond DNA sequencing [PDF]

, 2022
Inspired by the biological processes of molecular recognition and transportation across membranes, nanopore techniques have evolved in recent decades as ultrasensitive analytical tools for individual molecules.
Fragasso, Alessio, Long, Yi-Tao, Maglia, Giovanni, Qing, Yujia, Meller, Amit, Hu, Zheng-Li, Bayley, Hagan, Ying, Yi-Lun, Zhang, Shengli, Dekker, Cees   +9 more
core   +1 more source

Assessing FOXA1-driven mRNA processing in prostate cancer with Nanopore long-read sequencing [PDF]

, 2022
Despite advances in the diagnosis and treatment of early stage of prostate cancer (PC), there are few therapeutic options for end-stage metastatic castration-resistant PC.
Matteo Cereda
core  

Rapid diagnosis of intra-amniotic infection using nanopore-based sequencing [PDF]

, 2023
Objectives: Early diagnosis and treatment of intra-amniotic infection is crucial. Rapid pathogen identification allows for a definite diagnosis and enables proper management.
Piroon Jenjaroenpun, Romero, R, Thidathip Wongsurawat, Adithep Jaovisidha, Paninee Mongkolsuk, Thaipisuttikul, I, Iyarit Thaipisuttikul, Jenjaroenpun, P, Wongsurawat, T, Roberto Romero, Threebhorn Kamlungkuea, Chaemsaithong, P, Lertrut, W, Pongchaikul, P, Jung, E, Waranyu Lertrut, Mongkolsuk, P, Suksai, M, Arunee Singhsnaeh, Pornpun Vivithanaporn, Manaphat Suksai, Kamlungkuea, T, Singhsnaeh, A, Eunjung Jung, Vivithanaporn, P, Nitayanon, P, Piya Chaemsaithong, Pisut Pongchaikul, Jaovisidha, A, Khontawan Pongsuktavorn, Perapon Nitayanon, Pongsuktavorn, K   +31 more
core   +1 more source

From squiggle to basepair: computational approaches for improving nanopore sequencing read accuracy

Genome Biology, 2018
Nanopore sequencing is a rapidly maturing technology delivering long reads in real time on a portable instrument at low cost. Not surprisingly, the community has rapidly taken up this new way of sequencing and has used it successfully for a variety of ...
Franka J. Rang, Wigard P. Kloosterman, Jeroen de Ridder   +2 more
doaj   +1 more source

Modification mapping by nanopore sequencing

Frontiers in Genetics, 2022
Next generation sequencing (NGS) has provided biologists with an unprecedented view into biological processes and their regulation over the past 2 decades, fueling a wave of development of high throughput methods based on short read DNA and RNA sequencing. For nucleic acid modifications, NGS has been coupled with immunoprecipitation, chemical treatment,
Laura K. White, Jay R. Hesselberth
openaire   +3 more sources

Rapid Nanopore Sequencing to Identify Bacteria Causing Prosthetic Joint Infections [PDF]

Background/Objectives: The diagnosis of prosthetic joint infection remains difficult. Microbiological cultures frequently have false-positive and false-negative results.
Charlotte Hulme, Cool, Paul, Hollie Wilkinson, Hulme, Charlotte, Wright, Karina, Perry, Jade, Niall Steele, Townsend, Rob, McCarthy, Helen S., Rob Townsend, Helen S. McCarthy, Steele, Niall, Jade Perry, Wilkinson, Hollie, Benjamin Burston, Burston, Benjamin, Karina Wright, Paul Cool   +17 more
core   +1 more source