Results 161 to 170 of about 11,306,965 (261)

Experimental and genomic evidence clarifies the mycorrhizal helper role of a widespread bacterium in Bishop pine forests

New Phytologist, EarlyView.
Hypothetical model of Paraburkholderia–EcMF–Bishop pine interactions. Summary Whether a widespread bacterial strain of Paraburkholderia can enhance the physiological responses of ectomycorrhizal fungi (EcMF) and host Bishop pine seedling growth remains unclear. We developed a ‘top‐down meets bottom‐up’ approach that harmonized data from molecular field
Louis Berrios, Deborah L. Narh, Lia Kim, Kabir G. Peay   +3 more
wiley   +1 more source

Closing bacterial genomes using the Rapid Sequencing Kit (SQK-RBK114) from Oxford Nanopore Technologies (ONT) v2

This protocol is intended for whole genome sequencing of pure bacteria isolates (mainly foodborne pathogens) using the latest Oxford Nanopore Technologies (ONT) long-read sequencing.
Ellie Meeks, Narjol Gonzalez-Escalona, Kathryn Judy, Maria Hoffmann   +3 more
core   +1 more source

Structural Variations Contribute to Subspeciation and Yield Heterosis in Rice

Plant Biotechnology Journal, EarlyView.
ABSTRACT Yield heterosis has been extensively exploited in hybrid breeding, with intersubspecific hybrids often exhibiting the most pronounced effects. However, developing elite hybrids remains a laborious and time‐consuming process. The genetic basis of heterosis has been debated for over a century, hindered largely by the lack of high‐quality genomes.
Zhiwu Dan, Yunping Chen, Wenchao Huang
wiley   +1 more source

TDFPS-Designer: an efficient toolkit for barcode design and selection in nanopore sequencing

Genome Biology
Oxford Nanopore Technologies (ONT) offers ultrahigh-throughput multi-sample sequencing but only provides barcode kits that enable up to 96-sample multiplexing. We present TDFPS-Designer, a new toolkit for nanopore sequencing barcode design, which creates
Junhai Qi, Zhengyi Li, Yao-zhong Zhang, Guojun Li, Xin Gao, Renmin Han   +5 more
doaj   +1 more source

High‐Contiguity Haplotype‐Resolved Genome Assembly of the Hexaploid Actinidia valvata Rootstock Sheds Light on Waterlogging Resistance Gene

Plant Biotechnology Journal, EarlyView.
ABSTRACT Polyploidisation, creating redundant or diverged copies of the genome, is a major driving force in plant evolution, diversification and environmental adaptation, including for the kiwifruit genus (Actinidia Lindl.). We present a high‐contiguity, haplotype‐resolved genome assembly of the hexaploid Actinidia valvata rootstock cultivar ...
Miaomiao Lin, Zhi Li, Cecilia H. Deng, Congcong Li, Zhengzhen Zhang, Yukuo Li, Qina Zhang, Peng Zhang, Leiming Sun, Mingyu Liu, Jinbao Fang, Xiujuan Qi   +11 more
wiley   +1 more source

O52: Diagnostic benefits of long-read genome sequencing for short-read negative rare disease cases

Genetics in Medicine Open
Alan Beggs, Tina Truong, Wanqing Shao, Bryan Leland, Kshitij Amar, Mehmet Bugrahan Duz, Nathaniel Edisis, Casie Genetti, Médéric Jeanne, Pratiksha Pradhan, Priyesh Rughani, Luca Schierbaum, Shirlee Shril, Rebecca Stubbs, Malika Sud, Kenney Tuyen, Carly Tyer, Talia Tzadikario, Scott Hickey, Sissel Juul, Piotr Sliz, Monica Wojcik, Friedhelm Hildebrandt, Catherine Brownstein, Miten Jain, Wendy Chung   +25 more
doaj   +1 more source

Tonoplast‐Localized ABCC Transporters Enhance Heterologous Production of the Antidiabetic Montbretin A and Its Analogues in Nicotiana benthamiana

Plant Biotechnology Journal, EarlyView.
ABSTRACT The plant‐derived specialized metabolite montbretin A (MbA) is under development as an improved treatment for Type 2 diabetes, a worldwide epidemic. MbA is an acylated flavonol glycoside so far only found in small amounts in montbretia (Crocosmia × crocosmiiflora) corms.
Charlotte Hijmans, Filipe Cabrita Cruz, Lars H. Kruse, Joerg Bohlmann, Sandra Irmisch   +4 more
wiley   +1 more source

Genome‐Wide Association Study Elucidates the Genetic Architecture of Manganese Tolerance in Brassica napus

Plant, Cell &Environment, EarlyView.
ABSTRACT Brassica napus (canola) is a significant contributor to the world's oil production and is cultivated across continents, yet acidic soils with aluminium (Al3+) and manganese (Mn2+) toxicities limit its production. The genetic determinants underlying natural variation for acidic soil tolerance in canola are unknown and need to be determined ...
Harsh Raman, Zetao Bai, Brett McVittie, Sourav Mukherjee, Hugh D. Goold, Yuanyuan Zhang, Nay Chi Khin, Yu Qiu, Nawar Shamaya, Shengyi Liu, Regine Delourme, Barry J. Pogson, Sureshkumar Balasubramanian, Rosy Raman   +13 more
wiley   +1 more source

Colonisation History of Freshwater Snails Across the Atlantic and Mediterranean Islands: Insights From Mercuria (Littorinimorpha, Hydrobiidae)

Zoologica Scripta, EarlyView.
ABSTRACT Islands harbour unique biodiversity, and depending on their geological origin, they have fundamentally different colonisation histories: continental islands may contain relict faunas shaped by vicariance and sporadic gene flow, whereas oceanic islands must have been colonised across open seas, often through long‐distance dispersal events ...
Jonathan P. Miller, Omar Sánchez, Vincent Prié, Diana Delicado   +3 more
wiley   +1 more source

Telomere‐to‐telomere CHM13 reference reveals missing truth variants and improves deep learning‐based variant calling in long‐read sequencing data

Quantitative Biology, Volume 14, Issue 4, December 2026.
Abstract Although long‐read sequencing enables comprehensive genomic analysis, its potential is hindered by its reliance on the incomplete GRCh38 reference genome. GRCh38’s unresolved bases, structural errors, and haplotype mosaics introduce reference biases, leading to missed variants and false‐positive calls.
Zhenxian Zheng, Minggao He, Xian Yu, Lei Chen, Junzhe Li, Jingcheng Zhang, Ruibang Luo   +6 more
wiley   +1 more source