Finding approximate tandem repeats in genomic sequences [PDF]
Proceedings of the eighth annual international conference on Computational molecular biology - RECOMB '04, 2004 An efficient algorithm is presented for detecting approximate tandem repeats in genomic sequences. The algorithm is based on a flexible statistical model which allows a wide range of definitions of approximate tandem repeats. The ideas and methods underlying the algorithm are described and its effectiveness on genomic data is demonstrated.
Ydo, Wexler +3 more
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STRING: finding tandem repeats in DNA sequences [PDF]
Bioinformatics, 2003 Abstract Motivation and results: The importance of Tandem Repeats in some genomes is now well established. We have reported elsewhere some interesting new results obtained by means of a preliminary program for finding Tandem Repeats in DNA sequences, together with a brief description of the basic ideas of the algorithm.
ALUFFI PENTINI, Filippo +2 more
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Assembly and Characterization of the Mitochondrial Genome of Fallopia aubertii (L. Henry) Holub
Frontiers in Bioscience-Landmark, 2023 Background: Fallopia aubertii (L. Henry) Holub is a perennial semi-shrub with both ornamental and medicinal value. The mitochondrial genomes of plants contain valuable genetic traits that can be utilized for the exploitation of genetic resources.
Xin Zhang, Yong-Chang Lu, Jiu-Li Wang
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Functional and Immunological Relevance of Anaplasma marginale Major Surface Protein 1a Sequence and Structural Analysis. [PDF]
, 2013 Bovine anaplasmosis is caused by cattle infection with the tick-borne bacterium, Anaplasma marginale. The major surface protein 1a (MSP1a) has been used as a genetic marker for identifying A.
Cabezas-Cruz, Alejandro +14 more
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Totally Mutant Telomeres: Single-Step Mutagenesis of Tandem Repeat DNA Sequences [PDF]
BioTechniques, 2001 Dana Hager Underwood +1 more
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Search for Highly Divergent Tandem Repeats in Amino Acid Sequences [PDF]
International Journal of Molecular Sciences, 2021 We report a Method to Search for Highly Divergent Tandem Repeats (MSHDTR) in protein sequences which considers pairwise correlations between adjacent residues. MSHDTR was compared with some previously developed methods for searching for tandem repeats (TRs) in amino acid sequences, such as T-REKS and XSTREAM, which focus on the identification of TRs ...
Rudenko, Valentina, Korotkov, Eugene
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Locating tandem repeats in weighted sequences in proteins [PDF]
BMC Bioinformatics, 2013 Abstract A weighted biological sequence is a string in which a set of characters may appear at each position with respective probabilities of occurrence. We attempt to locate all the tandem repeats in a weighted sequence. A repeated substring is called a tandem repeat if each occurrence of the substring is directly adjacent to each other.
Zhang, Hui +2 more
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The Singular Evolution of Olea Genome Structure
Frontiers in Plant Science, 2022 The current view of plant genome evolution proposes that genome size has mainly been determined by polyploidisation and amplification/loss of transposons, with a minor role played by other repeated sequences, such as tandem repeats.
Flavia Mascagni +9 more
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Immune activation by a multigene family of lectins with variable tandem repeats in oriental river prawn (Macrobrachium nipponense) [PDF]
Open Biology, 2020 Genomic regions with repeated sequences are unstable and prone to rapid DNA diversification. However, the role of tandem repeats within the coding region is not fully characterized.
Ying Huang +12 more
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Identification of Variable-Number Tandem-Repeat (VNTR) Sequences in Acinetobacter baumannii and Interlaboratory Validation of an Optimized Multiple-Locus VNTR Analysis Typing Scheme [PDF]
Journal of Clinical Microbiology, 2010 Christine Pourcel +6 more
openalex +2 more sources