Results 31 to 40 of about 237,694 (293)

Core of the saliva microbiome: an analysis of the MG-RAST data

BMC Oral Health, 2021
Background Oral microbiota is considered as the second most complex in the human body and its dysbiosis can be responsible for oral diseases. Interactions between the microorganism communities and the host allow establishing the microbiological proles ...
Simone G. Oliveira, Rafaela R. Nishiyama, Claudio A. C. Trigo, Ana Luiza Mattos-Guaraldi, Alberto M. R. Dávila, Rodrigo Jardim, Flavio H. B. Aguiar   +6 more
doaj   +1 more source

Highly Variable Genomic Landscape of Endogenous Retroviruses in the C57BL/6J Inbred Strain, Depending on Individual Mouse, Gender, Organ Type, and Organ Location. [PDF]

, 2017
Transposable repetitive elements, named the "TREome," represent ~40% of the mouse genome. We postulate that the germ line genome undergoes temporal and spatial diversification into somatic genomes in conjunction with the TREome activity.
Cho, Kiho, Greenhalgh, David, Lee, Kang-Hoon, Lim, Debora   +3 more
core   +2 more sources

An Economical and Flexible Dual Barcoding, Two-Step PCR Approach for Highly Multiplexed Amplicon Sequencing

Frontiers in Microbiology, 2021
In microbiome research, phylogenetic and functional marker gene amplicon sequencing is the most commonly-used community profiling approach. Consequently, a plethora of protocols for the preparation and multiplexing of samples for amplicon sequencing have
Petra Pjevac, Petra Pjevac, Bela Hausmann, Bela Hausmann, Jasmin Schwarz, Jasmin Schwarz, Gudrun Kohl, Gudrun Kohl, Craig W. Herbold, Alexander Loy, Alexander Loy, David Berry, David Berry   +12 more
doaj   +1 more source

Reconciliation between operational taxonomic units and species boundaries [PDF]

, 2017
The development of high-throughput sequencing technologies has revolutionised the field of microbial ecology via 16S rRNA gene amplicon sequencing approaches.
Boon, Nico, Kerckhof, Frederiek-Maarten, Leys, Natalie, Monsieurs, Pieter, Mysara, Mohamed, Props, Ruben, Raes, Jeroen, Vandamme, Peter   +7 more
core   +2 more sources

Study of microbiocenosis of canine dental biofilms

Scientific Reports, 2021
Dental biofilm is a complex microbial community influenced by many exogenous and endogenous factors. Despite long-term studies, its bacterial composition is still not clearly understood.
Jana Kačírová, Aladár Maďari, Rastislav Mucha, Lívia K. Fecskeová, Izabela Mujakic, Michal Koblížek, Radomíra Nemcová, Marián Maďar   +7 more
doaj   +1 more source

VarDict: a novel and versatile variant caller for next-generation sequencing in cancer research [PDF]

, 2016
Accurate variant calling in next generation sequencing (NGS) is critical to understand cancer genomes better. Here we present VarDict, a novel and versatile variant caller for both DNA- and RNA-sequencing data.
Ahdesmaki, Miika, Barrett, J. Carl, Chapman, Brad, Dougherty, Brian, Dry, Jonathan R., Hofmann, Oliver, Johnson, Justin, Lai, Zhongwu, Markovets, Aleksandra, McEwen, Robert   +9 more
core   +2 more sources

Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom [PDF]

, 2020
© The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Bhatnagar, S., Cowley, E. S., Kopf, S. H., Pérez Castro, S., Kearney, S., Dawson, S. C., Hanselmann, K.
Bhatnagar, Srijak, Castro, Sherlynette Pérez, Cowley, Elise S, Dawson, Scott C, Hanselmann, Kurt, Kearney, Sean, Kearney, Sean Michael, Kopf, Sebastian H, Pérez Castro, Sherlynette, Ruff, S. E   +9 more
core   +1 more source

Development of amplicon deep sequencing markers and data analysis pipeline for genotyping multi-clonal malaria infections

BMC Genomics, 2017
Background Amplicon deep sequencing permits sensitive detection of minority clones and improves discriminatory power for genotyping multi-clone Plasmodium falciparum infections.
Anita Lerch, Cristian Koepfli, Natalie E. Hofmann, Camilla Messerli, Stephen Wilcox, Johanna H. Kattenberg, Inoni Betuela, Liam O’Connor, Ivo Mueller, Ingrid Felger   +9 more
doaj   +1 more source

MT-Toolbox: improved amplicon sequencing using molecule tags [PDF]

BMC Bioinformatics, 2014
Abstract Background Short oligonucleotides can be used as markers to tag and track DNA sequences. For example, barcoding techniques (i.e. Multiplex Identifiers or Indexing) use short oligonucleotides to distinguish between reads from different DNA samples pooled for high-throughput sequencing.
Yourstone, Scott M, Lundberg, Derek S, Dangl, Jeffery L, Jones, Corbin D   +3 more
openaire   +2 more sources

Hormaphis cornu amplicon sequencing script

, 2020
Code used in analysis of the PCR amplicon sequencing data of the significant GWAS SNPs in dgc gene, associated with the publication "A novel family of secreted insect proteins linked to plant gall development" by Korgaonkar et al. (2021). amplicon_seq_haplotypes.R uses Hcor_ampliconSeq_plates1-12_shortRef_gatk_v2+bcftools_genotypes_manualEdited_AK.tsv ...
Aishwarya Korgaonkar, Han, Clair, Stern, David   +2 more
openaire   +1 more source