Results 21 to 30 of about 49,031 (262)
BMC Research Notes, 2012 Background Synonymous codon usage bias has typically been correlated with, and attributed to translational efficiency. However, there are other pressures on genomic sequence composition that can affect codon usage patterns such as mutational biases. This
O'Connell Mary J +6 more
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Synonymous codon usage in TTSuV2: analysis and comparison with TTSuV1. [PDF]
PLoS ONE, 2013 Two species of the DNA virus Torque teno sus virus (TTSuV), TTSuV1 and TTSuV2, have become widely distributed in pig-farming countries in recent years.
Zhicheng Zhang, Wei Dai, Dingzhen Dai
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The effect of multiple evolutionary selections on synonymous codon usage of genes in the Mycoplasma bovis genome. [PDF]
PLoS ONE, 2014 Mycoplasma bovis is a major pathogen causing arthritis, respiratory disease and mastitis in cattle. A better understanding of its genetic features and evolution might represent evidences of surviving host environments.
Jian-hua Zhou +8 more
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Frontiers in Microbiology, 2016 Codon usage bias, as a combined interplay from mutation and selection, has been intensively studied in Escherichia coli. However, codon usage analysis in an E. coli pangenome remains unexplored and the relative importance of mutation and selection acting
Shixiang Sun +3 more
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Codon usage in nucleopolyhedroviruses
Journal of General Virology, 2000 Phylogenetic analyses based on baculovirus polyhedrin nucleotide and amino acid sequences revealed two major nucleopolyhedrovirus (NPV) clades, designated Group I and Group II. Subsequent phylogenetic analyses have revealed three Group II subclades, designated A, B and C.
David B, Levin, Beatrixe, Whittome
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Analysis of codon usage pattern in Lonicera × heckrottii ‘Gold Flame’ based on chloroplast genome
Notulae Botanicae Horti Agrobotanici Cluj-Napoca, 2022 Codon usage bias (CUB) was a unique feature of the genome, and revealing chloroplast genome codon usage bias can provide useful information for the evolution of plant species.
Jiaqiang ZHANG +3 more
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Comprehensive Analysis of Codon Usage on Porcine Astrovirus
Viruses, 2020 Porcine astrovirus (PAstV), associated with mild diarrhea and neurological disease, is transmitted in pig farms worldwide. The purpose of this study is to elucidate the main factors affecting codon usage to PAstVs.
Huiguang Wu +4 more
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Codon Usage of Hepatitis E Viruses: A Comprehensive Analysis
Frontiers in Microbiology, 2022 Hepatitis E virus (HEV) is an emerging zoonotic pathogen with multiple species and genotypes, which may be classified into human, animal, and zoonotic HEV. Codon usage bias of HEV remained unclear.
Bingzhe Li +5 more
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Genome-wide analysis of codon usage and influencing factors in chikungunya viruses.
PLoS ONE, 2014 Chikungunya virus (CHIKV) is an arthropod-borne virus of the family Togaviridae that is transmitted to humans by Aedes spp. mosquitoes. Its genome comprises a 12 kb single-strand positive-sense RNA.
Azeem Mehmood Butt +2 more
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Causes and implications of codon usage bias in RNA viruses. [PDF]
PLoS ONE, 2013 Choice of synonymous codons depends on nucleotide/dinucleotide composition of the genome (termed mutational pressure) and relative abundance of tRNAs in a cell (translational pressure).
Ilya S Belalov, Alexander N Lukashev
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