Results 31 to 40 of about 4,395,934 (279)

FastDMA: an infinium humanmethylation450 beadchip analyzer. [PDF]

PLoS ONE, 2013
DNA methylation is vital for many essential biological processes and human diseases. Illumina Infinium HumanMethylation450 Beadchip is a recently developed platform studying genome-wide DNA methylation state on more than 480,000 CpG sites and a few CHG ...
Dingming Wu, Jin Gu, Michael Q Zhang
doaj   +1 more source

DNA methylation and gene expression changes in mouse mammary tissue during successive lactations: part I – the impact of inflammation

Epigenetics, 2023
Mastitis is among the main reasons women cease breastfeeding, which leads to them supplementing breast milk with artificial formula. In farm animals, mastitis results in significant economic losses and the premature culling of some animals. Nevertheless,
E. Ivanova, C. Hue-Beauvais, A. Chaulot-Talmon, J. Castille, J Laubier, C De Casanove, A. Aubert-Frambourg, P. Germon, H. Jammes, F. Le Provost   +9 more
doaj   +1 more source

Comprehensive analysis of differences of N6-methyladenosine of lncRNAs between atrazine-induced and normal Xenopus laevis testis

Genes and Environment, 2021
Background Increasing evidence suggested N6-methyladenosine (m6A) modification is crucial for male germline development. However, m6A modification of lncRNAs gains a little attention in amphibians in recent years. Xenopus laevis (X. laevis) was chosen to
Xuejie Qi, Xiao Geng, Juan Zhang, Binpeng Qu, Xin Zhang, Qiang Jia, Wenhui Yin, Cunxiang Bo, Yan Liu, Hao Li, Linlin Sai, Mingming Han, Cheng Peng   +12 more
doaj   +1 more source

Comprehensive analysis of circRNAs for N7‐methylguanosine methylation modification in human oral squamous cell carcinoma

FASEB BioAdvances, 2023
N7‐methylguanosine (m7G) modification is closely related to the occurrence of tumors. However, the m7G modification of circRNAs in oral squamous cell carcinoma (OSCC) remains to be investigated.
Dongyuan Sun, Ning Song, Minmin Li, Xi Chen, Xinyue Zhang, Yang Yu, Jicheng Ying, Mengqi Xu, Wentian Zheng, Chengbing Han, Honghai Ji, Yingying Jiang   +11 more
doaj   +1 more source

Heatmaps as for expression of validated-Differentially-Expressed-Genes-Differentially-Methylated-Genes (vDEGs-DMGs) based on TCGA data.

, 2022
The top left corner) Expression values of over-expressed/hypo-methylated vDEGs-DMGs in COAD. The bottom left corner) Expression values of under-expressed/hyper-methylated vDEGs-DMGs in COAD.
Amir Mehrgou (12295124), Shahram Teimourian (12295127)   +1 more
core   +1 more source

The creation of autotetraploid provides insights into critical features of DNA methylome changes after genome doubling in water spinach (Ipomoea aquatica Forsk)

Frontiers in Plant Science, 2023
Water spinach (Ipomoea aquatica Forsk) is an essential green leafy vegetable in Asia. In this study, we induced autotetraploid water spinach by colchicine. Furthermore, DNA methylation and transcriptome of tetraploid and diploid were compared using Whole
Yuanyuan Hao, Yuanyuan Hao, Yuanyuan Hao, Xiao Su, Wen Li, Lin Li, Lin Li, Yu Zhang, Yu Zhang, Muhammad Ali Mumtaz, Muhammad Ali Mumtaz, Huangying Shu, Huangying Shu, Huangying Shu, Shanhan Cheng, Shanhan Cheng, Guopeng Zhu, Guopeng Zhu, Zhiwei Wang, Zhiwei Wang, Zhiwei Wang   +20 more
doaj   +1 more source

Heatmaps as for expression and methyaltion of validated-Differentially-Expressed-Genes-Differentially-Methylated-Genes (vDEGs-DMGs) based on our participants’ data.

, 2022
The top left corner) Expression values of over-expressed/hypo-methylated vDEGs-DMGs. The bottom left corner) Expression values of under-expressed/hyper-methylated vDEGs-DMGs.
Amir Mehrgou (12295124), Shahram Teimourian (12295127)   +1 more
core   +1 more source

Calling differentially methylated regions from whole genome bisulphite sequencing with DMRcate

Nucleic Acids Research, 2021
Whole genome bisulphite sequencing (WGBS) permits the genome-wide study of single molecule methylation patterns. One of the key goals of mammalian cell-type identity studies, in both normal differentiation and disease, is to locate differential ...
Timothy J. Peters, Michael J. Buckley, Yun-Shun Chen, G. Smyth, C. Goodnow, S. Clark   +5 more
semanticscholar   +1 more source

Large-scale placenta DNA methylation integrated analysis reveals fetal sex-specific differentially methylated CpG sites and regions

Scientific Reports, 2022
Although male–female differences in placental structure and function have been observed, little is understood about their molecular underpinnings. Here, we present a mega-analysis of 14 publicly available placenta DNA methylation (DNAm) microarray ...
Shan V. Andrews, Irene J. Yang, Karolin Froehlich, T. Oskotsky, Marina Sirota   +4 more
semanticscholar   +1 more source

Asymmetric DNA methylation of CpG dyads is a feature of secondary DMRs associated with the Dlk1/Gtl2 imprinting cluster in mouse

Epigenetics & Chromatin, 2017
Background Differential DNA methylation plays a critical role in the regulation of imprinted genes. The differentially methylated state of the imprinting control region is inherited via the gametes at fertilization, and is stably maintained in somatic ...
Megan Guntrum, Ekaterina Vlasova, Tamara L. Davis   +2 more
doaj   +1 more source