WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads [PDF]
, 2009 Gerlach W, Jünemann S, Tille F, Goesmann A, Stoye J. WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinformatics.
Jünemann, Sebastian +14 more
core +2 more sources
Transcriptome sequencing of sesame (Sesamum indicum) using Illumina Platform
The Indian Journal of Agricultural Sciences, 2023 Sesame is an important oil seed crop worldwide and has essential health and medicinal values. In the present study, a high-throughput transcriptome sequencing of sesame was performed using Illumina paired-end sequencing technology for gene and marker ...
P SUPRIYA, A R RAO, K V BHAT
doaj +1 more source
The First Insight into the Tissue Specific Taxus Transcriptome via Illumina Second Generation Sequencing [PDF]
, 2011 The First Insight into the Tissue Specific Taxus Transcriptome via Illumina Second Generation SequencingBackground: Illumina second generation sequencing is now an efficient route for generating enormous sequence collections that represent expressed ...
Yang Ling +15 more
core +1 more source
Hybrid Enterobacteriaceae assemblies using PacBio+Illumina or ONT+Illumina sequencing [PDF]
, 2019 Data associated with: De Maio, Shaw, et al. on behalf of the REHAB consortium (2019), Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes. biorxiv 530824 Illumina sequencing allows rapid, cheap and accurate
Nicola De Maio (233448) +2 more
core +1 more source
Genomics Data, 2017 Next generation sequencing using platforms such as Illumina MiSeq provides a deeper insight into the structure and function of bacterioplankton communities in coastal ecosystems compared to traditional molecular techniques such as clone library approach ...
Anwesha Ghosh, Punyasloke Bhadury
doaj +1 more source
Illumina MiSeq sequencing disfavours a sequence motif in the GFP reporter gene [PDF]
Scientific Reports, 2016 AbstractGreen fluorescent protein (GFP) is one of the most used reporter genes. We have used next-generation sequencing (NGS) to analyse the genetic diversity of a recombinant influenza A virus that expresses GFP and found a remarkable coverage dip in the GFP coding sequence.
Van den Hoecke, Silvie +2 more
openaire +3 more sources
Serial Illumina Sequencing (SI-Seq). [PDF]
, 2012 (A) Schematic of the 16S rRNA locus with the hypervariable regions indicated as cylinders. The V5 through V7 hypervariable regions are PCR amplified with using universal primers tagged with 8-mer barcodes on their 5′ ends. (B) Ligation of Illumina paired-
Pauline Fung (131308) +13 more
core +1 more source
Summary of Illumina sequencing and transcriptome assembly. [PDF]
, 2015 Summary of Illumina sequencing and transcriptome assembly.
Hai-ming Yang (830134) +5 more
core +1 more source
Adapterama II: universal amplicon sequencing on Illumina platforms (TaggiMatrix) [PDF]
PeerJ, 2019 Next-generation sequencing (NGS) of amplicons is used in a wide variety of contexts. In many cases, NGS amplicon sequencing remains overly expensive and inflexible, with library preparation strategies relying upon the fusion of locus-specific primers to ...
Travis C. Glenn +26 more
doaj +2 more sources
PRI-CAT: a web-tool for the analysis, storage and visualization of plant ChIP-seq experiments. [PDF]
, 2011 Although several tools for the analysis of ChIP-seq data have been published recently, there is a growing demand, in particular in the plant research community, for computational resources with which such data can be processed, analyzed, stored ...
Muino, J.M. +9 more
core +1 more source