Results 1 to 10 of about 37,526 (188)

From Methylomes to CRISPR Epigenetic Editing: New Paths in Antibiotic Resistance [PDF]

Pathogens
Antibiotic resistance (AR) has long been interpreted through the lens of genetic mutations and horizontal gene transfer. Yet, mounting evidence suggests that epigenetic regulation, including DNA and RNA methylation, histone-like proteins, and small non ...
Nada M. Nass, Kawther A. Zaher
doaj   +2 more sources

Grass Meal Acts as a Probiotic in Chicken

Microbiology Research, 2023
Probiotics can act as an alternative to antibiotics in animal feeding, but their use is minimal due to their expensive production. Dry grass is rich with bacteria beneficial for animal feeding and can be used as a probiotic.
Elena S. Bogdanova, Maria A. Danilova, Maria S. Smirnova, Elena V. Trubnikova, Hoa T. Nguyen, Svetlana N. Petrova, Sergey V. Apanasenok, Alexei B. Shevelev   +7 more
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Complete genome assembly and methylome dissection of Methanococcus aeolicus PL15/Hp

Frontiers in Microbiology, 2023
Although restriction-modification systems are found in both Eubacterial and Archaeal kingdoms, comparatively less is known about patterns of DNA methylation and genome defense systems in archaea.
Alexey Fomenkov, Peter Weigele, Colleen McClung, Casey Madinger, Richard J. Roberts   +4 more
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Non-Association of Driver Alterations in PTEN with Differential Gene Expression and Gene Methylation in IDH1 Wildtype Glioblastomas

Brain Sciences, 2023
During oncogenesis, alterations in driver genes called driver alterations (DAs) modulate the transcriptome, methylome and proteome through oncogenic signaling pathways.
Mrinmay Kumar Mallik, Kaushik Majumdar, Shiraz Mujtaba   +2 more
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Integration of Transcriptome and Methylome Highlights the Roles of Cell Cycle and Hippo Signaling Pathway in Flatfish Sexual Size Dimorphism

Frontiers in Cell and Developmental Biology, 2021
Sexual size dimorphism (SSD) is the difference in segments or body size between sexes prevalent in various species. Understanding the genetic architecture of SSD has remained a significant challenge owing to the complexity of growth mechanisms and the ...
Na Wang, Na Wang, Na Wang, Qian Yang, Qian Yang, Jialin Wang, Jialin Wang, Rui Shi, Rui Shi, Ming Li, Ming Li, Jin Gao, Wenteng Xu, Wenteng Xu, Wenteng Xu, Yingming Yang, Yingming Yang, Yingming Yang, Yadong Chen, Yadong Chen, Yadong Chen, Songlin Chen, Songlin Chen, Songlin Chen   +23 more
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Genome wide exploration of the methylome in aggressive B-cell lymphoma in Golden Retrievers reveals a conserved hypermethylome

Epigenetics, 2022
Few recurrent DNA mutations are seen in aggressive canine B cell lymphomas (cBCL), suggesting other frequent drivers. The methylated island recovery assay (MIRA-seq) or methylated CpG-binding domain sequencing (MBD-seq) was used to define the genome-wide
Shirley Chu, Anne Avery, Janna Yoshimoto, Jeffrey N. Bryan   +3 more
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Whole‐genome DNA methylation patterns of Oryza sativa (L.) and Oryza glumaepatula (Steud) genotypes associated with aluminum response

Plant Direct, 2022
Epigenetic mechanisms in crops have emerged as a fundamental factor in plant adaptation and acclimation to biotic and abiotic stresses. Among described epigenetic mechanisms, DNA methylation has been defined as the most studied epigenetic modification ...
Jenny Johana Gallo‐Franco, Thaura Ghneim‐Herrera, Fabian Tobar‐Tosse, Miguel Romero, Juliana Chaura, Mauricio Quimbaya   +5 more
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Differences in the Accessory Genomes and Methylomes of Strains of Streptococcus equi subsp. equi and of Streptococcus equi subsp. zooepidemicus Obtained from the Respiratory Tract of Horses from Texas

Microbiology Spectrum, 2022
Streptococcus equi subsp. equi (SEE) is a host-restricted equine pathogen considered to have evolved from Streptococcus equi subsp. zooepidemicus (SEZ). SEZ is promiscuous in host range and is commonly recovered from horses as a commensal.
Ellen Ruth A. Morris, Jing Wu, Angela I. Bordin, Sara D. Lawhon, Noah D. Cohen   +4 more
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Case report: Complete paternal isodisomy on chromosome 18 induces methylation changes in PARD6G-AS1 promotor in a case with arthrogryposis

Frontiers in Genetics, 2023
Uniparental disomy (UPD) is the inheritance of both alleles of a chromosome from only one parent. So far, the detection of UPDs in sequencing data is not well established and a known gap in next-generation sequencing (NGS) diagnostics.
Johanna Moch, Maximilian Radtke, Janina Gburek-Augustat, Maike Karnstedt, Senta Schönnagel, Stephan H. Drukewitz, Laura Pilgram, Julia Hentschel, Isabell Schumann   +8 more
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Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications. [PDF]

, 2010
Analysis of DNA methylation patterns relies increasingly on sequencing-based profiling methods. The four most frequently used sequencing-based technologies are the bisulfite-based methods MethylC-seq and reduced representation bisulfite sequencing (RRBS),
A Bird, A Hellman, A Meissner, AD Smith, Adam Olshen, AK Maunakea, Aleksandar Milosavljevic, Alexander Meissner, Allen Delaney, Andreas Gnirke, AP Feinberg, B Langmead, Bing Ren, Bradley E Bernstein, Brett E Johnson, C Coarfa, C Grunau, Charles B Epstein, Chibo Hong, Christoph Bock, Cristian Coarfa, D Serre, David Haussler, DM Duhl, FV Jacinto, G Bourque, G Kunarso, G Robertson, H Gu, H Lin, H O'Geen, Henriette O'Geen, Hongcang Gu, J Deng, Joseph F Costello, Joseph R Ecker, Junchen Gu, KD Robertson, Kevin J Forsberg, KR Blahnik, KS Pollard, LC Schalkwyk, Lorigail Echipare, M Pick, M Tahiliani, MA Gama-Sosa, Marco A Marra, Martin Hirst, Mattia Pelizzola, Michael Q Zhang, MP Ball, P Arnaud, Peggy J Farnham, PVK Pant, R Alan Harris, R David Hawkins, R Lister, R Lister, RA Waterland, RA Waterland, Raman P Nagarajan, Robert A Waterland, Ryan Lister, S Ito, S Kriaucionis, Sara L Downey, Shaun D Fouse, SJ Cokus, T Wang, TA Down, TE Ludwig, Ting Wang, Tracy Ballinger, Wei Li, Wen-Yu Chung, Xin Zhou, Y Xi, Yongjun Zhao, Yuanxin Xi, ZD Smith   +79 more
core   +5 more sources