Results 41 to 50 of about 197,824 (292)

Microsatellite development from genome skimming and transcriptome sequencing: comparison of strategies and lessons from frog species

BMC Genomics, 2018
Background Even though microsatellite loci frequently have been isolated using recently developed next-generation sequencing (NGS) techniques, this task is still difficult because of the subsequent polymorphism screening requires a substantial amount of ...
Yun Xia, Wei Luo, Siqi Yuan, Yuchi Zheng, Xiaomao Zeng   +4 more
doaj   +1 more source

Functional and immunological relevance of Anaplasma marginale major surface protein 1a sequence and structural analysis.

PLoS ONE, 2013
Bovine anaplasmosis is caused by cattle infection with the tick-borne bacterium, Anaplasma marginale. The major surface protein 1a (MSP1a) has been used as a genetic marker for identifying A.
Alejandro Cabezas-Cruz, Lygia M F Passos, Katarzyna Lis, Rachel Kenneil, James J Valdés, Joana Ferrolho, Miray Tonk, Anna E Pohl, Libor Grubhoffer, Erich Zweygarth, Varda Shkap, Mucio F B Ribeiro, Agustín Estrada-Peña, Katherine M Kocan, José de la Fuente   +14 more
doaj   +1 more source

Microsatellite instability at tetranucleotide repeats in skin and bladder cancer [PDF]

Oncogene, 2002
Recently, a novel form of MSI has been described that occurs only at tetranucleotide repeat markers. This has been termed elevated microsatellite instability at selected tetranucleotide repeats (EMAST). EMAST has been related to alterations of the p53 gene, and to the nature of the repeat sequence.
Hadi, Danaee, Heather H, Nelson, Margaret R, Karagas, Alan R, Schned, Tara Devi S, Ashok, Tomoko, Hirao, Ann E, Perry, Karl T, Kelsey   +7 more
openaire   +2 more sources

Status of elevated microsatellite alterations at selected tetranucleotide repeats (EMAST) status in pancreatic ductal adenocarcinoma patients.

, 2018
Status of elevated microsatellite alterations at selected tetranucleotide repeats (EMAST) status in pancreatic ductal adenocarcinoma patients.
Mihoko Yamade (6061184), Satoshi Osawa (6061190), Taiki Mori (387896), Takahisa Furuta (331775), Moriya Iwaizumi (115669), Yasushi Hamaya (742670), Takahiro Uotani (6061181), Ken Sugimoto (49310), Hiroaki Miyajima (6061187)   +8 more
core   +1 more source

MeCP2 is a microsatellite binding protein that protects CA repeats from nucleosome invasion

, 2021
International audienceThe Rett syndrome protein MeCP2 was described as a methyl-CpG-binding protein, but its exact function remains unknown. Here we show that mouse MeCP2 is a microsatellite binding protein that specifically recognizes hydroxymethylated ...
Ibrahim, Abdulkhaleg, Mohideen-Abdul, Kareem, Le Gras, Stéphanie, Stoll, Isabelle, Papin, Christophe, Bronner, Christian, Klaholz, Bruno, Hamiche, Ali, Dimitrov, Stefan, Mohideen-Abdul, Kareem (author), Gras, Stéphanie Le (author), Dimitrov, Stefan (author), Hamiche, Ali (author), Papin, Christophe (author), Klaholz, Bruno P. (author), Stoll, Isabelle (author), Ibrahim, Abdulkhaleg (author), Bronner, Christian (author), Christian Bronner, Stefan Dimitrov, Ali Hamiche, Stéphanie Le Gras, Abdulkhaleg Ibrahim, Bruno P. Klaholz, Kareem Mohideen-Abdul, Christophe Papin, Isabelle Stoll   +26 more
core   +1 more source

Signatures of Population Expansion in Microsatellite Repeat Data

Genetics, 1998
Abstract To examine the signature of population expansion on genetic variability at microsatellite loci, we consider a population that evolves according to the time-continuous Moran model, with growing population size and mutations that follow a general asymmetric stepwise mutation model.
M, Kimmel, R, Chakraborty, J P, King, M, Bamshad, W S, Watkins, L B, Jorde   +5 more
openaire   +2 more sources

Distribution and Comparative Analysis of Genomic Microsatellites in Nine Species of Family Sillaginidae

Fishes
We conducted a comparative analysis of the identified microsatellite sequences across the genomes of nine sillaginids. We examined the microsatellites with motifs ranging from 1 to 6 bp in length and analyzed their distribution and frequency across ...
Yinquan Qu, Caihui Qu, Changxu Tian, Tianxiang Gao, Yuan Zhang   +4 more
doaj   +1 more source

Microsatellite Markers for the New Zealand Endemic Tree Fuchsia excorticata (Onagraceae)

Applications in Plant Sciences, 2013
Premise of the study: Microsatellite markers were developed from a New Zealand endemic understory tree, Fuchsia excorticata, to investigate factors affecting the mating system.
Megan L. Van Etten, Alastair W. Robertson, Jennifer A. Tate   +2 more
doaj   +1 more source

Data Mining for Simple Sequence Repeats in Oil Palm Expressed Sequence Tags [PDF]

, 2009
Expressed Sequence Tags or ESTs are small pieces of DNA sequence that are generated by sequencing either one or both ends of an expressed gene. ESTs provide researchers with a quick and inexpensive route for discovering new genes, for obtaining data on ...
Vadivel Arunachalam, Aikkal Riju
core  

Microsatellite distribution.

, 2013
Repeats with frequency > = 3 are shown. Locations of microsatellite repeats are classified by color: exon (green), intron (red) and intergenic (blue) regions.
Masataka Satomi (387950), Motoshige Yasuike (387948), Kiyoshi Inouye (387961), Motohiko Sano (134553), Yuya Shigenobu (387949), Yoji Nakamura (387944), Naobumi Sasaki (387945), Kazuhiro Nakajima (387958), Tokio Wada (387960), Ichiro Nakayama (387956), Atsumi Tsujimoto (387953), Takashi Gojobori (2581), Fuminari Ito (387957), Koji Shiwaku (387952), Nobuhiko Ojima (387947), Yoshiya Fukuma (387951), Satoru Kuhara (35932), Masahiro Kobayashi (387946), Takanori Kobayashi (387954), Kazuho Ikeo (2984)   +19 more
core   +1 more source