Results 91 to 100 of about 33,843 (263)

Leishmania major (strain Friedlin) sequencing reads generated from total RNA by Oxford Nanopore technology

open access: yes
This project was aimed to sequence total RNA from Leishmania major promastigotes using the Oxford Nanopore Technology (ONT) methodology. This dataset consists of two Fastq files, generated by MinION Mk1C (ONT) MC-114562 device (Basecalling was performed
Solana, Jose Carlos   +3 more
core   +1 more source

Oxford Nanopore Long read fasta file for Allorhizobium vitis K309

open access: yes, 2018
<p>Oxford Nanopore Long read fasta file for Allorhizobium vitis K309. Fast5 files were basecalled with Albacore v2.3.
Han Ming Gan (7214096), Han Ming Gan
core   +1 more source

In Vivo Cytoskeletal AMPA Receptor Transport Imaging in C. elegans

open access: yesCytoskeleton, EarlyView.
ABSTRACT Long‐distance intracellular transport of ionotropic glutamate receptors (iGluRs) is essential for proper excitatory synaptic function underlying learning and memory. Many neuropsychiatric and neurodegenerative conditions have abnormal iGluR transport and trafficking, leading to an intense interest in the mechanisms and factors regulating these
Michaelis A. K., Hoerndli F. J.
wiley   +1 more source

Rapid Nanopore Sequencing to Identify Bacteria Causing Prosthetic Joint Infections

open access: yes
Background/Objectives: The diagnosis of prosthetic joint infection remains difficult. Microbiological cultures frequently have false-positive and false-negative results.
Charlotte Hulme   +17 more
core   +1 more source

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer

open access: yes, 2017
International audienceBackground: Oxford Nanopore Technologies Ltd (Oxford, UK) have recently commercialized MinION, a small single-molecule nanopore sequencer, that offers the possibility of sequencing long DNA fragments from small genomes in a matter ...
Cruaud, Corinne   +29 more
core   +1 more source

Improving genetic diagnosis of hereditary tumor syndromes: From expanded gene panels to functional genomics

open access: yesInternational Journal of Cancer, EarlyView.
Abstract Genetic tumor risk syndromes (genturis) contribute substantially to the overall cancer burden and provide opportunities for early detection, prevention, and individualized treatment. Yet, many affected individuals remain undiagnosed due to restrictive testing criteria and challenges in variant interpretation.
Mayra Sauer   +11 more
wiley   +1 more source

Global plasmidome analysis in sewage samples: new perspectives on microbial adaptation and antimicrobial resistance.

open access: yes, 2023
noneI plasmidi possono fornire un vantaggio selettivo per i microorganismi, permettendo loro di sopravvivere e adattarsi a nuove condizioni ambientali.
BISSON, NAZARENO
core  

Gamma SARS‐CoV‐2 variant of concern infection repercussions on pregnancy outcomes: A translational cohort study

open access: yesInternational Journal of Gynecology &Obstetrics, EarlyView.
Abstract Objective This study conduct viral genome sequencing among severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2)‐infected pregnant and postpartum individuals, and investigates disease severity and maternal and perinatal outcomes considering variant of concern (VOC) and non‐VOC groups.
Guilherme M. Nobrega   +27 more
wiley   +1 more source

Hybrid correction of highly noisy Oxford Nanopore long reads using a variable-order de Bruijn graph

open access: yes, 2017
MotivationThe recent rise of long read sequencing technologies such as Pacific Biosciences and Oxford Nanopore allows to solve assembly problems for larger and more complex genomes than what allowed short reads technologies. However, these long reads are
Pierre Morisse   +2 more
core   +1 more source

L‐EasyARG: A long‐read metagenomics tool for rapid antibiotic‐resistance‐gene profiling

open access: yesiMetaOmics, EarlyView.
L‐EasyARG is a pipeline for long‐read metagenomic profiling of antibiotic resistance genes (ARGs) and their genetic context. It integrates ARG identification, plasmid and mobile genetic element (MGE) detection, taxonomic classification, and further identifies ARGs carried by human bacterial pathogens (HBPs) defined in the WHO and ESKAPE pathogen lists.
Yongxin Li   +9 more
wiley   +1 more source

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