Results 81 to 90 of about 33,843 (263)

Data for ONTbarcoder 2.0: Rapid species discovery and identification with real-time barcoding facilitated by Oxford Nanopore R10.4

, 2023
Nanopore raw data relating to the study "Rapid species discovery and identification with real-time barcoding facilitated by ONTbarcoder 2.0 and Oxford Nanopore R10.4"
Amrita Srivathsan (7323200), Brent Emerson (6875039), Vivian Feng (15373964), Rudolf Meier (15286550), Daniel Suárez (16734760)   +4 more
core   +1 more source

Optimised use of Oxford Nanopore Flowcells for Hybrid Assemblies [PDF]

, 2020
Hybrid assemblies are highly valuable for studies of Enterobacteriaceae due to their ability to fully resolve the structure of mobile genetic elements, such as plasmids, which are involved in the carriage of clinically important genes (e.g.
Kavanagh, J, Jeffery, K, Stoesser, Nicole, Lipworth, S, Chau, KK, Chau, Kevin, Jeffery, Katherine, Vaughan, A, Swann, J, Kavanagh, James, Morgan, Marcus, Walker, Sarah, Barker, Leanne, Andersson, M, Crook, D, Pickford, H, Peto, TEA, Barker, L, Andersson, Monique, Vaughan, Alison, Sanderson, Nicholas, Sanderson, N, Stoesser, N, Crook, Derrick, Pickford, Hayleah, Walker, A, Swann, Jeremy, Lipworth, Samuel, Peto, Timothy, Morgan, M   +29 more
core   +1 more source

A cost‐effective DNA extraction protocol for long‐read sequencing in non‐model plants

Applications in Plant Sciences, EarlyView.
Abstract Premise Third‐generation sequencing has revolutionized genomics, enabling in‐depth analysis of genome sequence, structure, and epigenetic features. Yet, extracting high‐quality DNA for long‐read sequencing remains a bottleneck—particularly in non‐model plants, such as mature trees growing in natural environments, which often contain abundant ...
Sofia Gaischuk, Cintia F. Marchetti, Ezequiel Petrillo, Fernando A. Rabanal, Detlef Weigel, Nicolás Bellora, M. Verónica Arana   +6 more
wiley   +1 more source

Los desafíos de analizar datos de metabarcoding provenientes de secuenciación con Oxford Nanopore®

, 2023
La tecnología de secuenciación de Oxford Nanopore®, caracterizada por permitir obtener secuencias largas y en tiempo real, es una alternativa a otras tecnologías de secuenciación dentro de las tecnologías conocidas como de nueva generación (NGS).
Blanco Casallas, Irene
core   +1 more source

HapAsmbl: A reference‐aided pipeline for assembling haplotypes in Nanopore amplicon sequence data of polymorphic populations

Applications in Plant Sciences, EarlyView.
Abstract Premise Advances in long‐read sequencing offer new possibilities to investigate haplotype diversity across multiple genes in plants and other taxa through multi‐locus, long‐read amplicon sequencing (multi‐locus LRAS). Despite this progress, there is a notable absence of dedicated bioinformatics pipelines for assembling diploid haplotypes of ...
Ayodele Oluwaseyi Fakoya, Augustine Chen, Rowan Paul Herridge, Richard Colin Macknight, Lynette Ruth Brownfield   +4 more
wiley   +1 more source

De novo Nanopore read quality improvement using deep learning

BMC Bioinformatics, 2019
Background Long read sequencing technologies such as Oxford Nanopore can greatly decrease the complexity of de novo genome assembly and large structural variation identification.
Nathan LaPierre, Rob Egan, Wei Wang, Zhong Wang   +3 more
doaj   +1 more source

The ageing holobiont: crosstalk between telomere dynamics, oxidative stress and the gut microbiome

Biological Reviews, EarlyView.
ABSTRACT The gut tissue is at the frontline of early onset of ageing. It exhibits high cell turnover rates and rapid telomere shortening, which can have systemic effects on the developing or senescing organism. We conducted a literature review of studies on the crosstalk between telomere length dynamics, telomerase activity, oxidative stress, and gut ...
Michael L. Pepke, Søren B. Hansen, Morten T. Limborg   +2 more
wiley   +1 more source

Leishmania infantum JPCM5 sequencing reads generated from total RNA by Oxford Nanopore technology

This project was aimed to sequence total RNA from Leishmania infantum JPCM5 promastigotes using the Oxford Nanopore Technology (ONT) methodology. This dataset consists of two Fastq files, generated by MinION Mk1C (ONT) MC-114562 device (Basecalling was ...
Solana, Jose Carlos, Sanchez-Salvador, Alejandro, Adán Jiménez, Javier, Requena Rolanía, Jose María   +3 more
core   +1 more source

Heteroatom‐Doped Graphdiynes and Their Applications in Photo‐/Electro‐Catalytic CO2 Conversion

Carbon Innovation, EarlyView.
This review highlights the versatile role of doped graphdiyne (GDY) in boosting CO2 conversion, where metal and non‐metal doping simultaneously tune the electronic structure, create abundant active sites, and improve charge separation, light harvesting, and CO2 adsorption.
Fangzhou Yang, Yuwei Zhang, Wai‐Yeung Wong, Linli Xu   +3 more
wiley   +1 more source

A comparison of short- and long-read whole-genome sequencing for microbial pathogen epidemiology

mSystems
Whole-genome sequencing provides the highest resolution for characterizing pathogen evolution, epidemiology, and diagnostics. Genome assemblies contain information on the identity and potential phenotypes of a pathogen.
Andrea M. Schiffer, Arafat Rahman, Wendy Sutton, Melodie L. Putnam, Alexandra J. Weisberg   +4 more
doaj   +1 more source