Results 191 to 200 of about 5,800,592 (273)

Emergence of a Novel, Phenotypically Difficult‐to‐Detect Vancomycin‐Resistant Enterococcus faecium Clone (ST117/CT7799)

MicrobiologyOpen, Volume 15, Issue 5, October 2026.
A newly emerged vanB‐VREfm clone (ST117/CT7799) causes an ongoing outbreak in southeastern Austria. The cluster is highly homogenous, even for isolates sampled months apart. Resistance is easily missed via disk diffusion, gradient tests, and microdilution. VITEK 2 testing reliably detects vancomycin‐resistance.
Patrick Forstner, Christine Uitz, Johanna Dabernig‐Heinz, Gabriel E. Wagner, Jennifer Bender, Martin Fischer, David Siebenhofer, Guido Werner, Tobias Busche, Levin Joe Klages, Christian Rückert‐Reed, Ivo Steinmetz, Karl Dichtl   +12 more
wiley   +1 more source

A de novo algorithm for allele reconstruction from Oxford nanopore amplicon reads, with application to CYP2D6. [PDF]

Bioinformatics
Brown SD, Dreolini L, Minor A, Mozel M, Wong N, Mar S, Lieu A, Khan M, Carlson A, Hrynchak M, Holt RA, Missirlis PI.   +11 more
europepmc   +1 more source

Molecular Diagnostics for WHO Priority Bacterial Pathogens: A Bibliometric Mapping of Diagnostic Platforms, Resistance Markers, and Antimicrobial Resistance Research Trends

MicrobiologyOpen, Volume 15, Issue 5, October 2026.
This bibliometric mapping of 1746 publications (2000–2025) charts molecular diagnostics for WHO priority bacterial pathogens across platforms, targets, and resistance markers. Conventional PCR/NAAT and whole‐genome sequencing emerge as complementary core platforms, and the field evolves from targeted pathogen detection into an AMR‐centered ...
Selahattin Ünlü
wiley   +1 more source

Multilocus Oxford Nanopore sequencing reveals genetic diversity of Giardia duodenalis and Cryptosporidium spp. in surface and wastewater in Southwestern Colombia. [PDF]

Parasit Vectors
Gutiérrez S, Urrea V, Patiño LH, Hidalgo-Troya A, Galeano LA, Muñoz M, Ramírez JD.   +6 more
europepmc   +1 more source

Interrogating the Escherichia coli Epitranscriptome Via CRISPR Interference and Nanopore Native RNA Sequencing

MicrobiologyOpen, Volume 15, Issue 5, October 2026.
Epitranscriptomics is understudied in bacteria but has the ability to modulate antimicrobial resistance, virulence and pathogenicity. Pitt et al. implement two cutting‐edge techniques: CRISPR interference and Nanopore direct RNA sequencing along with functional assays to study RNA modifications in Escherichia coli.
Miranda E. Pitt, Jianshu Zhang, An N. T. Nguyen, Michael B. Hall, Leila Jebeli, Leo A. Featherstone, Garry S. A. Myers, Nichollas E. Scott, Lachlan J. M. Coin   +8 more
wiley   +1 more source

Development of a Multiplex Amplification System Using Oxford Nanopore Sequencing for STRs and InDels. [PDF]

Hum Mutat
Han W, Zhang Q, Zhang X, Feng M, Xu H, Geng X, Wang Y, Zhou Z.   +7 more
europepmc   +1 more source

First Report of blaCTX‐M‐15 in a Marine Thermotolerant Enterobacter Isolate From Bangladesh: Genomic Insights Into Halotolerance and Antimicrobial Resistance

MicrobiologyOpen, Volume 15, Issue 5, October 2026.
Marine‐derived Enterobacter kobei, exhibiting thermotolerance and salt tolerance, is ESBL‐producing and harbors AMR genes (blaCTX‐M‐15, qnrS1) and mobile genetic elements, indicating environmental spread of antimicrobial resistance. ABSTRACT Marine ecosystems are becoming important reservoirs for antimicrobial resistance (AMR). However, genomic data on
Md. Arifur Rahman, Rafid Muntasir Ul Azam, Md. Sazib Hossain, Samina Momtaz, Anowara Begum, Munawar Sultana   +5 more
wiley   +1 more source

Identification of Molecular Pathways Underlying Mn(II) Oxidation in Pseudomonas resinovorans

Environmental Microbiology, Volume 28, Issue 10, October 2026.
Transposon mutagenesis in biofilter‐associated Pseudomonas resinovorans MOB‐513 identifies a c‐di‐GMP‐dependent regulatory network involving type IV pili, two‐component systems, and diguanylate cyclases that controls Mn(II) oxidation and biofilm formation, providing new insight into microbial manganese cycling and biofilter performance.
Ainelén Piazza, Lucia Parra, Marilina Gaffuri, Jacob G. Malone, Jorgelina Ottado, Natalia Gottig   +5 more
wiley   +1 more source

The lung microbiome in childhood-onset severe neuromuscular disease with respiratory insufficiency: rationale, current evidence, and opportunities for oxford nanopore long-read sequencing. [PDF]

Mol Cell Pediatr
Cirak S, Grieshaber V, Müller P, Chao CM.   +3 more
europepmc   +1 more source

Performance of mechanically sheared DNA in multiplexed Oxford Nanopore sequencing for <i>Salmonella</i> Typhi genomic surveillance. [PDF]

Microb Genom
Maung HT, Morita M, Han SM, Mishima H, Koga C, Evangelista JWC, Girasol MJ, Suzuki S, Yoshiura KI, Kodama T, Smith C, Hiyoshi H.   +11 more
europepmc   +1 more source