Results 201 to 210 of about 5,800,592 (273)

MitoNumt: A Workflow for Recovering Mitochondrial Genomes From Long‐Read Data and Detecting NUMT Contamination in Mitochondrial Genome Assemblies

Molecular Ecology Resources, Volume 26, Issue 7, October 2026.
ABSTRACT Nuclear mitochondrial DNA segments (NUMTs) are genomic DNA fragments that originate from historical insertions of mitochondrial DNA sequences into the nuclear genome. During mitochondrial genome (mtgenome) assembly from short‐read genome sequencing data, NUMT fragments may be misidentified and incorporated into mtgenome assemblies, leading to ...
Ruidong Cao, Tong Xin, Yubo Hao, Yibo Hu
wiley   +1 more source

DNA methylation profiles of quail blood cells by whole-genome bisulfite and Oxford Nanopore sequencing. [PDF]

Sci Data
Cerutti C, Leroux S, Terzian P, Gourichon D, Lledo J, Iampietro C, Sabban J, Vernette C, Klopp C, Donnadieu C, Devailly G, Pitel F, Vandecasteele C.   +12 more
europepmc   +1 more source

ITSxRust: ITS Region extraction with partial‐chain recovery and structured diagnostics for long‐read amplicon sequencing

Methods in Ecology and Evolution, Volume 17, Issue 10, Page 2843-2853, October 2026.
Abstract Long‐read amplicon sequencing is now routine for fungal metabarcoding, and locating the internal transcribed spacer (ITS) subregions within reads has become a throughput bottleneck. Existing extractors were designed for shorter reads and for datasets in which near‐identical sequences are common, and neither assumption holds for Oxford Nanopore
Aaron O'Brien, Catalina Lagos, Kiara Fernández, Bárbara Ojeda, Pilar Parada   +4 more
wiley   +1 more source

Evaluation of Oxford nanopore sequencing for antimicrobial resistance surveillance in <i>Salmonella</i>: comparison with phenotypic antimicrobial susceptibility in a large-scale study. [PDF]

Microbiol Spectr
Hong Y-P, Liao Y-S, Wang Y-W, Kuo S-C, Teng R-H, Liang S-Y, Chang J-H, Wei HL, Chiou C-S.   +8 more
europepmc   +1 more source

Elucidating the Role of SET as a Key Contributor to Neurodevelopmental Disability Within the 9q34.11 Deletion Syndrome Interval

Clinical Genetics, Volume 110, Issue 4, Page 438-448, October 2026.
This study reports a female proband with a de novo 9q34.11 deletion affecting SET, who underwent a 28‐year diagnostic odyssey after an atypical Rett syndrome clinical diagnosis. Genomic and proteomics analyses confirmed SET haploinsufficiency, refining the critical 9q34.11 region, and supporting speech therapy benefits in improving meaningful ...
Angelo Condell, Elaine Zhang, Tim Sikora, Sean Massey, Nicole J. Van Bergen, Min Wang, Cas Simons, Katrina M. Bell, Daniella H. Hock, David A. Stroud, David Francis, Wendy A. Gold, Martin B. Delatycki, John Christodoulou, Simranpreet Kaur   +14 more
wiley   +1 more source

Sequencing complete plasmids on Oxford Nanopore Technologies sequencers using R2C2 and Chopper. [PDF]

PLoS One
Schimke KD, Vollmers C.
europepmc   +1 more source

Serotypic and Genomic Diversity of Vibrio anguillarum in Rainbow Trout Farms in Turkey: Implications for Vibriosis Control and Vaccine Candidate Selection

Journal of Fish Diseases, Volume 49, Issue 10, October 2026.
ABSTRACT Outbreaks of vibriosis caused by Vibrio anguillarum are a persistent constraint on rainbow trout (Oncorhynchus mykiss) aquaculture. However, information on the population structure of field strains in Turkey has been lacking. Here, we report the first systematic serotypic, proteomic, and genomic characterization of 23 V.
Soner Altun, Muhammed Duman, Jesús L. Romalde, Nihed Ajmi, Gorkem Tasci, Cuneyt Ozakin, Nazmiye Ulku Tuzemen, Bekir Akça, Sebahattin Ergün, Sevdan Yılmaz, Izzet Burcin Saticioglu   +10 more
wiley   +1 more source

Adaptation of custom capture sequencing panels to the Oxford Nanopore MinION platform. [PDF]

Mol Biol Rep
Kapoor V, Sanchez-Vicente S, Donovan W, Park J, Nagapurkar A, Gokden A, Shrivastava P, Horn E, Briese T, Lipkin WI, Tokarz R.   +10 more
europepmc   +1 more source

Dissecting the genetic basis of climatic adaptation in wild relatives (Malus baccata) for climate‐resilient apple breeding

Journal of Integrative Plant Biology, Volume 68, Issue 10, Page 3705-3726, October 2026.
This comprehensive map of genetic variation in wild apple (Malus baccata) and set of key genes associated with adaptation to temperature, precipitation, and soil properties establishes a foundation for breeding climate‐resilient apple cultivars and conserving the genetic resources of wild crop relatives.
Ying Su, Yani Hao, Xuejing Cao, Lin Wang, Zhiqi Xu, Fan Zhang, Zhiyao Ma, Xu Wang, Jiacui Li, Tianrong Fan, Ruoyan Zhao, Zhongqi Liu, Wenrui Wang, Yingchun Zhang, Xuanwen Yang, Sifan Yang, Dajiang Wang, Kun Wang, Simiao Sun, Zichen Li, Wen Tian, Yanming Sun, Zhao Liu, Yanshuai Xu, Hua Xiao, Yanling Peng, Xiaodong Xu, Ruirui Liu, Xinmin Tian, Yongfeng Zhou, Yuan Gao   +30 more
wiley   +1 more source

Benchmarking Full-Length ITS Metabarcoding Across Illumina 2 × 500, PacBio, and Oxford Nanopore Sequencing Using Mock and Soil Communities. [PDF]

Mol Ecol Resour
Tedersoo L, Prous M, Chen M, Anslan S, Saar I, Dubois B, Mikryukov V.   +6 more
europepmc   +1 more source