Results 221 to 230 of about 33,843 (263)

cONcat: Computational reconstruction of concatenated fragments from long Oxford Nanopore reads. [PDF]

PLoS One
Petri AJ, Thi-Huyen Nguyen M, Rajwar A, Benson E, Sahlin K.   +4 more
europepmc   +1 more source

Full‐Length 16S and 18S rRNA Long‐Read Sequencing Reveals Gut Microbiome Diversity in the European Brown Hare (Lepus europaeus)

Environmental Microbiology Reports, Volume 18, Issue 3, June 2026.
Full‐length 16S and 18S rRNA Oxford Nanopore sequencing of large intestine contents from 30 healthy European brown hares revealed broad gut microbiome diversity. An 80% identity threshold detected substantially greater taxonomic richness than 95%, emphasizing the value of long‐read sequencing in wildlife microbiome research. ABSTRACT The European brown
Zbigniew Bełkot, Mateusz G. Adamski, Zuzanna J. Strzałkowska, Ewa D. Domańska, Daria Kłosińska, Grzegorz Kunstman, Dawid Skoczek, Joanna Pławińska‐Czarnak   +7 more
wiley   +1 more source

Unraveling the intra-species genomic diversity of sweetpotato-infecting CRESS-DNA and RNA viruses in Burkina Faso using Oxford Nanopore sequencing. [PDF]

Front Microbiol
Name PE, Tibiri EB, Tiendrébéogo F, Sawadogo S, Djigma F, Traoré L, Eni AO, Pita JS.   +7 more
europepmc   +1 more source

Spiroplasma Are Protective Heritable Symbionts With Low Physiological Impact in the Drosophilid Fly Zaprionus kolodkinae

Environmental Microbiology Reports, Volume 18, Issue 3, June 2026.
Zaprionus kolodkinae flies carry a maternally inherited ixodetis clade Spiroplasma that protects its host against wasp attack but has low overall physiological impact. Genome analysis presented a set of known symbiosis‐relevant effectors, and one encoding—a ricin B domain protein—that is novel to this Spiroplasma genome.
Nuha Alamer, Stefanos Siozios, Chris Corbin, Emily A. Hornett, Jordan E. Jones, Gregory D. D. Hurst   +5 more
wiley   +1 more source

From short to long: The impact of read length on metagenome assembly and binning

Methods in Ecology and Evolution, Volume 17, Issue 6, Page 1788-1798, June 2026.
Abstract Metagenome sequencing not only plays a pivotal role in unravelling the genetic diversity and functional potential of microbial communities but also facilitates the discovery of genome context for microbial dark matter. This study presents a comparative analysis of metagenome sequencing strategies, focusing on the impact of read length on the ...
Xi Peng, Xingsheng Yang, Danrui Wang, Bo Zhao, Kai Feng, Qing He, Shang Wang, Ye Deng   +7 more
wiley   +1 more source

Comparison of Oxford Nanopore Technologies sequencing protocols using R9.4.1 and R10.4.1 flow cells under 20-hour and 48-hour conditions for genotyping methicillin methicillin-resistant Staphylococcus aureus (MRSA). [PDF]

Mol Biol Rep
do Couto MSB, Helmersen K, Deola AV, Wagner G, Aamot HV, Ferreira FA.   +5 more
europepmc   +1 more source

Single‐Cell Omics Analysis of Human Basophils Reveals Two Transcriptionally Distinct Populations

Allergy, Volume 81, Issue 6, Page 2059-2068, June 2026.
Integrated single‐cell transcriptomics and large‐scale immunophenotyping reveal the molecular landscape of human basophils. Circulating basophils comprise two transcriptionally distinct populations. A user‐friendly web resource enables interactive exploration of the generated data.
Sofia Papavasileiou, Jiezhen Mo, Daryl Boey, Chenyan Wu, Magnus Tronstad, Lucille Margerie, Remi‐André Olsen, Jörg A. Bachmann, Jing Hui Low, Jocelyn Ong, Lars Heede Blom, Anand Kumar Andiappan, Gunnar Nilsson, Joakim S. Dahlin   +13 more
wiley   +1 more source

Ab initio detection of multiple epitranscriptomic modifications from Oxford nanopore technology direct RNA sequencing data. [PDF]

Brief Bioinform
Fonzino A, Fosso B, Visci G, Gissi C, Pesole G, Picardi E.   +5 more
europepmc   +1 more source

A Refined Method for Fecal Microbiota Transplantation Using Nutella

Clinical and Translational Science, Volume 19, Issue 6, June 2026.
ABSTRACT Fecal microbiota transplantation (FMT) in mice is an evolving research field, often employing oral gavage, which can be stressful and harmful for the animals and time‐consuming for technicians. Voluntary intake methods, such as delivery in Nutella, have successfully been used for drug administration in mice and may likewise be a promising tool
Ida W. Henriksen, Camilla H. F. Hansen, Janne Koch, Dorte B. Sørensen, Dennis S. Nielsen, Christina Bartholdy, Axel K. Hansen   +6 more
wiley   +1 more source

Oxford Nanopore Technologies Sequencing and Targeted Amino Acid Metabolomics Reveal Spatially Segregated Microbial Hijacking and Metabolic Collapse During <i>Trichoderma</i> Infection of Golden Ear Mushroom. [PDF]

Foods
Xu Y, Huang Y, Ye L, Yu J, Huang Z, Yang X, Tian Q, Zhang B, Liu Y, Li X.   +9 more
europepmc   +1 more source