Results 21 to 30 of about 25,431 (290)

Rapid diagnosis of fatal Nocardia kroppenstedtii bacteremic pneumonia and empyema thoracis by next-generation sequencing: a case report

Frontiers in Medicine, 2023
Nocardia species do not replicate as rapidly as other pyogenic bacteria and nocardial infections can be highly fatal, particularly in immunocompromised patients.
Fanfan Xing, Yao Xia, Qianyun Lu, Simon K. F. Lo, Susanna K. P. Lau, Patrick C. Y. Woo, Patrick C. Y. Woo, Patrick C. Y. Woo   +7 more
doaj   +1 more source

Matched Oxford Nanopore Technologies and Bisulfite Sequencing of the GM24385 Cell Line

, 2022
One of the most widespread genomic modifications is 5-methylcytosine (5mC), which most frequently occurs at CpG dinucleotides. Compared to whole-genome bisulfite sequencing, the traditional method of 5mC detection, nanopore technology can offer many ...
Oxford Nanopore Technologies
core   +1 more source

pycoMeth: a toolbox for differential methylation testing from Nanopore methylation calls

Genome Biology, 2023
We present pycoMeth, a toolbox to store, manage and analyze DNA methylation calls from long-read sequencing data obtained using the Oxford Nanopore Technologies sequencing platform.
Rene Snajder, Adrien Leger, Oliver Stegle, Marc Jan Bonder   +3 more
doaj   +1 more source

Applications and potentials of nanopore sequencing in the (epi)genome and (epi)transcriptome era

The Innovation, 2021
Summary: The Human Genome Project opened an era of (epi)genomic research, and also provided a platform for the development of new sequencing technologies.
Shangqian Xie, Amy Wing-Sze Leung, Zhenxian Zheng, Dake Zhang, Chuanle Xiao, Ruibang Luo, Ming Luo, Shoudong Zhang   +7 more
doaj   +1 more source

Nanopore sequencing technology and its application in plant virus diagnostics

Frontiers in Microbiology, 2022
Plant viruses threaten crop yield and quality; thus, efficient and accurate pathogen diagnostics are critical for crop disease management and control. Recent advances in sequencing technology have revolutionized plant virus research.
Kai Sun, Yi Liu, Xin Zhou, Chuanlin Yin, Pengjun Zhang, Qianqian Yang, Lingfeng Mao, Xuping Shentu, Xiaoping Yu   +8 more
doaj   +1 more source

Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use Case

Biology, 2021
With the rise of long-read sequencers and long-range technologies, delivering high-quality plant genome assemblies is no longer reserved to large consortia.
Benjamin Istace, Caroline Belser, Cyril Falentin, Karine Labadie, Franz Boideau, Gwenaëlle Deniot, Loeiz Maillet, Corinne Cruaud, Laurie Bertrand, Anne-Marie Chèvre, Patrick Wincker, Mathieu Rousseau-Gueutin, Jean-Marc Aury   +12 more
doaj   +1 more source

Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice

Genome Biology, 2020
Background The circum-basmati group of cultivated Asian rice (Oryza sativa) contains many iconic varieties and is widespread in the Indian subcontinent.
Jae Young Choi, Zoe N. Lye, Simon C. Groen, Xiaoguang Dai, Priyesh Rughani, Sophie Zaaijer, Eoghan D. Harrington, Sissel Juul, Michael D. Purugganan   +8 more
doaj   +1 more source

Sequencing Genome in a Bottle samples

, 2023
<p>We are pleased to announce the release of a new addition to the Oxford Nanopore Open Data project: sequencing of several Genome in a Bottle samples (including the Ashkenazi Trio). Sequencing was performed with the 5 kHz upgrade to the <a
Oxford Nanopore Technologies
core   +1 more source

Oxford Nanopore Technologies sequencing analysis pipeline.

, 2021
Flowchart shows each step taken to generate recombinant sequences from Oxford Nanopore sequencing data. Boxes represent processes in the pipeline, diamonds represent decision points and ovals represent termination points. (TIF)
David J. Evans (208308), Kirsten Bentley (426888), Andrew Woodman (577477), Fadi Ghassan Alnaji (11307931), Siân Jones (6986), Luke Woodford (576538)   +5 more
core   +1 more source

Profiling of Human Gut Virome with Oxford Nanopore Technology

Medicine in Microecology, 2020
Abstract Human gut virome play critical roles in maintaining gut microbial composition and functionality, as well as host physiology and immunology. Yet, there are insufficient amount of studies on this topic mainly due to methodological limitations, including enrichment of viruses (phages and host viruses) as well as short read-length ...
Cao, Jiabao, Zhang, Yuqing, Dai, Min, Xu, Jiayue, Chen, Liang, Zhang, Faming, Zhao, Na, Wang, Jun   +7 more
openaire   +2 more sources