Results 41 to 50 of about 11,306,965 (261)

Long-read sequencing report with Oxford Nanopore Technologies of different soil samples using different DNA extraction methods (Report 20.02.2023)

, 2023
Long-read sequencing report with Oxford Nanopore Technologies of different soil samples using different DNA extraction methods.
Andrey Zamyatnin (16857811), Olga Samuilova (16857733), Ulykbek Kairov (16857807), Konstantin I. Ivanov (16857730), Ruslan Kalendar (16857663)   +4 more
core   +1 more source

Resolving complex structural variants via nanopore sequencing

Frontiers in Genetics, 2023
The recent development of high-throughput sequencing platforms provided impressive insights into the field of human genetics and contributed to considering structural variants (SVs) as the hallmark of genome instability, leading to the establishment of ...
Simone Romagnoli, Niccolò Bartalucci, Alessandro Maria Vannucchi   +2 more
doaj   +1 more source

Absence of evidence is not evidence of absence: Nanopore sequencing and complete assembly of the European lobster (Homarus gammarus) mitogenome uncovers the missing nad2 and a new major gene cluster duplication

BMC Genomics, 2019
Background The recently published complete mitogenome of the European lobster (Homarus gammarus) that was generated using long-range PCR exhibits unusual gene composition (missing nad2) and gene rearrangements among decapod crustaceans with strong ...
Han Ming Gan, Frederic Grandjean, Tom L. Jenkins, Christopher Mervyn Austin   +3 more
doaj   +1 more source

Chenopodium Oxford Nanopore libraries

, 2022
Oxford Nanopore libraries of four diploid Chenopodium species (2n=2x=18), C. acuminatum, C. iljinii, C. pamiricum and C. suecicum.
Belyayev Alexander
core   +1 more source

The Complete Genome Resource of Xanthomonas oryzae pv. oryzae CIX2779 Includes the First Sequence of a Plasmid for an African Representative of This Rice Pathogen

Molecular Plant-Microbe Interactions, 2023
The bacterial plant pathogen Xanthomonas oryzae pv. oryzae is responsible for the foliar rice bacterial blight disease. Genetically contrasted, continent-specific, sublineages of this species can cause important damages to rice production both in Asia ...
Coline Sciallano, Florence Auguy, Gabriel Boulard, Boris Szurek, Sébastien Cunnac   +4 more
doaj   +1 more source

Is Oxford Nanopore Technology ready for clinical diagnostics?

, 2017
Bridging the “valley of death” between scientific and technological innovation and clinical implementation. Quality considerations for read mapping, variant calling and deletion mapping with Long Read Sequencing.
Taylor, Graham R., Kesia Brown, Bond, Andrew, Yau, Michael   +3 more
openaire   +1 more source

Application of Oxford Nanopore sequencing for the study of marine biodiversity

, 2023
reservedIl sequenziamento Oxford Nanopore ha permesso negli ultimi anni di migliorare le analisi metagenomiche, rendendo possibile l’identificazione di informazioni genetiche rilevanti dove le short reads avevano precedentemente fallito. In questo studio
CALLEGARO, ANDREA
core  

Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing

BMC Genomics, 2019
Background Short-read sequencing technologies have made microbial genome sequencing cheap and accessible. However, closing genomes is often costly and assembling short reads from genomes that are repetitive and/or have extreme %GC content remains ...
Sarah Goldstein, Lidia Beka, Joerg Graf, Jonathan L. Klassen   +3 more
doaj   +1 more source

LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data

G3: Genes, Genomes, Genetics, 2020
We propose LongQC as an easy and automated quality control tool for genomic datasets generated by third generation sequencing (TGS) technologies such as Oxford Nanopore technologies (ONT) and SMRT sequencing from Pacific Bioscience (PacBio).
Yoshinori Fukasawa, Luca Ermini, Hai Wang, Karen Carty, Min-Sin Cheung   +4 more
doaj   +1 more source

Phytophthora capsici genome assembly for two isolates using long-read Oxford Nanopore Technology sequencing

, 2023
International audienceThe oomycete Phytophthora capsici is a common pathogen of the Solanaceae and Cucurbitaceae families. An improved assembly for the reference isolate LT1534 was constructed using Oxford Nanopore Technologies and Illumina data ...
Lefebvre, Véronique, Lagnel, Jacques, Touhami, Nasradin, Lopez-Roques, Céline, Sayeh, Amalia, Bouchez, Olivier, Szadkowski, Emmanuel   +6 more
core   +1 more source