Results 31 to 40 of about 25,431 (290)

BoardION: real-time monitoring of Oxford Nanopore Technologies devices [PDF]

, 2020
Abstract Summary One of the main advantages of the Oxford Nanopore Technology (ONT) is the possibility of sequencing in real time. However, the ONT sequencing interface is not sufficient to explore the quality of sequencing data in depth and existing tools do not take full advantage of real-time data
Aimeric Bruno, Jean-Marc Aury, Stefan Engelen   +2 more
openaire   +1 more source

Identifying bacterial airways infection in stable severe asthma using Oxford nanopore sequencing technologies

, 2022
Previous metagenomic studies in asthma have been limited by inadequate sequencing depth for species-level bacterial identification and by heterogeneity in clinical phenotyping.
Cane, Jennifer, Hinks, timothy, Klenerman, paul, Jabeen, Maisha F, Pavord, ian, Thulborn, samantha, Borg, catherine, Sanderson, Nicholas, Street, teresa L, Foster, Dona, Crook, Derrick, Connolly, clare   +11 more
core   +1 more source

Long-read sequencing report with Oxford Nanopore Technologies of different soil samples using different DNA extraction methods.

, 2023
Long-read sequencing report with Oxford Nanopore Technologies of different soil samples using different DNA extraction ...
Andrey Zamyatnin (16857811), Olga Samuilova (16857733), Ulykbek Kairov (16857807), Konstantin I. Ivanov (16857730), Ruslan Kalendar (16857663)   +4 more
core   +1 more source

Benchmarking Oxford Nanopore read alignment‐based insertion and deletion detection in crop plant genomes

The Plant Genome, 2023
Structural variations (SVs) are larger polymorphisms (> 50 bp in length), which consist of insertions, deletions, inversions, duplications, and translocations.
Gözde Yildiz, Silvia F. Zanini, Nazanin P. Afsharyan, Christian Obermeier, Rod J. Snowdon, Agnieszka A. Golicz   +5 more
doaj   +1 more source

Long-read sequencing report with Oxford Nanopore Technologies of different soil samples using different DNA extraction methods (Report 20.02.2023)

, 2023
Long-read sequencing report with Oxford Nanopore Technologies of different soil samples using different DNA extraction methods.
Andrey Zamyatnin (16857811), Olga Samuilova (16857733), Ulykbek Kairov (16857807), Konstantin I. Ivanov (16857730), Ruslan Kalendar (16857663)   +4 more
core   +1 more source

An Introduction to Nanopore Sequencing: Past, Present, and Future Considerations

Micromachines, 2023
There has been significant progress made in the field of nanopore biosensor development and sequencing applications, which address previous limitations that restricted widespread nanopore use.
Morgan MacKenzie, Christos Argyropoulos
doaj   +1 more source

Phytophthora capsici genome assembly for two isolates using long-read Oxford Nanopore Technology sequencing

, 2023
International audienceThe oomycete Phytophthora capsici is a common pathogen of the Solanaceae and Cucurbitaceae families. An improved assembly for the reference isolate LT1534 was constructed using Oxford Nanopore Technologies and Illumina data ...
Lefebvre, Véronique, Lagnel, Jacques, Touhami, Nasradin, Lopez-Roques, Céline, Sayeh, Amalia, Bouchez, Olivier, Szadkowski, Emmanuel   +6 more
core   +1 more source

Constructing a Reference Genome in a Single Lab: The Possibility to Use Oxford Nanopore Technology [PDF]

Plants, 2019
The whole genome sequencing (WGS) has become a crucial tool in understanding genome structure and genetic variation. The MinION sequencing of Oxford Nanopore Technologies (ONT) is an excellent approach for performing WGS and it has advantages in comparison with other Next-Generation Sequencing (NGS): It is relatively inexpensive, portable, has simple ...
Yun Gyeong Lee, Sang Chul Choi, Yuna Kang, Kyeong Min Kim, Chon-Sik Kang, Changsoo Kim   +5 more
openaire   +3 more sources

Identification of an emerging cucumber virus in Taiwan using Oxford nanopore sequencing technology

Plant Methods, 2022
Abstract Background In June 2020, severe symptoms of leaf mosaic and fruit malformation were observed on greenhouse-grown cucumber plants in Xizhou Township of Changhua County, Taiwan. An unknown virus, designated CX-2, was isolated from a diseased cucumber sample by single lesion isolation on Chenopodium quinoa leaves ...
Zi-Xuan Dong, Chian-Chi Lin, Yuh-Kun Chen, Chia-Cheng Chou, Tsung-Chi Chen   +4 more
openaire   +3 more sources

Crystal structure of an invertebrate cytolysin pore reveals unique properties and mechanism of assembly

Nature Communications, 2016
Pore-forming toxins act by forming oligomeric pores in lipid membranes. Here the authors report the crystal structure of the lysenin pore, providing insights into the assembly and function of the pore in addition to suggesting that its properties make ...
Marjetka Podobnik, Peter Savory, Nejc Rojko, Matic Kisovec, Neil Wood, Richard Hambley, Jonathan Pugh, E. Jayne Wallace, Luke McNeill, Mark Bruce, Idlir Liko, Timothy M. Allison, Shahid Mehmood, Neval Yilmaz, Toshihide Kobayashi, Robert J. C. Gilbert, Carol V. Robinson, Lakmal Jayasinghe, Gregor Anderluh   +18 more
doaj   +1 more source