Reconsidering Molecular Docking Practices in Aptamer Research
Benchmarking against the theophylline aptamer crystal structure shows that current docking workflows generate incorrect structures and fail to predict binding specificity, underscoring the need for caution when interpreting docking results in aptamer research. Molecular docking is increasingly used to infer aptamer–target interactions, yet most studies
Yachen Xie, Juewen Liu
wiley +1 more source
Hydrocarbon α,ω‐dienes are mainly produced from steam‐cracking derivatives, but high costs, complexity, and environmental impact limit their use. This review highlights sustainable paths from biomass and plastic upcycling, and surveys catalytic transformations into carbocycles and specialty polymers, emphasizing their role as modular building blocks ...
Rosa Villaccio, Giuseppe Leone
wiley +1 more source
Why add another catalyst when the product itself holds the power to catalyze its own formation? Autocatalysis in synthetic chemistry enhances reaction efficiency and uncovers novel catalytic behavior across both closed‐shell and open‐shell systems, expanding reactivity and enabling innovative design strategies.
Jaspreet Kaur, Joshua P. Barham
wiley +1 more source
RepliSage: a stochastic graph-based framework for 3D chromatin modeling across the cell cycle. [PDF]
Korsak S +8 more
europepmc +1 more source
Chromosome segregation in a minimal bacterial cell driven by SMC protein complexes. [PDF]
Maytin AK +2 more
europepmc +1 more source
Faculty Opinions recommendation of Human cohesin compacts DNA by loop extrusion.
Giacomo Cavalli, Ivana Jerkovic
openaire +2 more sources
The eukaryotic homology search complex distorts donor DNA structure to probe for homology. [PDF]
Woodhouse MV +6 more
europepmc +1 more source
Cohesin-mediated loop extrusion and enhancer-associated factors additively contribute to <i>Sox2</i> looping with its distal enhancer. [PDF]
Martinovic M +7 more
europepmc +1 more source
Context-dependent regulation of IgH V(D)J recombination by cohesin-STAG1 and cohesin-STAG2. [PDF]
Chang F +7 more
europepmc +1 more source
A first-principles quantitative framework for how cohesin regulators shape chromatin loop extrusion. [PDF]
Huang Z, Liu X, Ding J.
europepmc +1 more source

