Results 61 to 70 of about 165,286 (161)

Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP

BMC Genomics, 2016
Therecent development and availability of different genotype by sequencing (GBS) protocols provided a cost-effective approach to perform high-resolution genomic analysis of entire populations in different species. The central component of all these protocols is the digestion of the initial DNA with known restriction enzymes, to generate sequencing ...
Perea, Claudia, Hoz, Juan Fernando de la, Cruz, Daniel Felipe, Lobaton, Juan David, Izquierdo, Paulo, Quintero, Juan Camilo, Raatz, Bodo, Duitama, Jorge   +7 more
openaire   +3 more sources

Improving genomic predictions by correction of genotypes from genotyping by sequencing in livestock populations

Journal of Animal Science and Biotechnology, 2019
Background Genotyping by sequencing (GBS) is a robust method to genotype markers. Many factors can influence the genotyping quality. One is that heterozygous genotypes could be wrongly genotyped as homozygotes, dependent on the genotyping depths. In this
Xiao Wang, Mogens Sandø Lund, Peipei Ma, Luc Janss, Haja N. Kadarmideen, Guosheng Su   +5 more
doaj   +1 more source

Population genetics and phylogeographic history of the insular lizard Podarcis lilfordi (Gunther, 1874) from the Balearic Islands based on genome‐wide polymorphic data

Ecology and Evolution
Islands provide a great system to explore the processes that maintain genetic diversity and promote local adaptation. We explored the genomic diversity of the Balearic lizard Podarcis lilfordi, an endemic species characterized by numerous small insular ...
Katherin Otalora, Joan Lluís Riera, Giacomo Tavecchia, Andreu Rotger, José Manuel Igual, Jean‐Remi Paul Trotta, Laura Baldo   +6 more
doaj   +1 more source

Genotyping by sequencing in almond

, 2017
In crop plant genetics, linkage maps provide the basis for the mapping of loci that affect important traits and for the selection of markers to be applied in crop improvement. In outcrossing species such as almond (Prunus dulcis Mill. D. A. Webb), application of a double pseudotestcross mapping approach to the F progeny of a biparental cross leads to ...
Goonetilleke, Shashi N., March, Timothy J., Wirthensohn, Michelle, Arús i Gorina, Pere, Walker, Amanda R., Mather, Diane E.   +5 more
openaire   +2 more sources

Genotyping by Sequencing in a High-Throughput Setting

, 2022
   The following notes guide us through the analysis of GBS data as we do it at AgResearch, New Zealand. It utilizes real data and unmodified software.    Any data shared here is without warranty of any kind and in no event shall the authors or copyright holders be liable for any claim, damages or any liability.
openaire   +1 more source

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

PLoS ONE, 2014
Genotyping by sequencing (GBS) is a next generation sequencing based method that takes advantage of reduced representation to enable high throughput genotyping of large numbers of individuals at a large number of SNP markers. The relatively straightforward, robust, and cost-effective GBS protocol is currently being applied in numerous species by a ...
Jeffrey C Glaubitz, Terry M Casstevens, Fei Lu, James Harriman, Robert J Elshire, Qi Sun, Edward S Buckler   +6 more
openaire   +4 more sources

HLA genotyping by next-generation sequencing of complementary DNA

BMC Genomics, 2017
Background Genotyping of the human leucocyte antigen (HLA) is indispensable for various medical treatments. However, unambiguous genotyping is technically challenging due to high polymorphism of the corresponding genomic region.
Hidenobu Segawa, Yoji Kukita, Kikuya Kato   +2 more
doaj   +1 more source

Genetic resources of African mahogany in Brazil: genomic diversity and structure of forest plantations

BMC Plant Biology
Background African mahogany species (Khaya sp.) have been introduced to Brazil gaining increasing economic interest over the last years, as they produce high quality wood for industrial applications.
Júlio Cézar Tannure Faria, Enéas Ricardo Konzen, Marcos Vinicius Winckler Caldeira, Tiago de Oliveira Godinho, Luciana Prata Maluf, Sarah Ola Moreira, Carolina da Silva Carvalho, Bárbara Simões Santos Leal, Cássia dos Santos Azevedo, Dione Richer Momolli, Gracielle Teodora da Costa Pinto Coelho, Conceição de Maria Batista de Oliveira, Taís Cristina Bastos Soares   +12 more
doaj   +1 more source

Genotyping-by-sequencing data of 272 crested wheatgrass ( Agropyron cristatum ) genotypes

Data in Brief, 2017
Crested wheatgrass [Agropyron cristatum L. (Gaertn.)] is an important cool-season forage grass widely used for early spring grazing. However, the genomic resources for this non-model plant are still lacking. Our goal was to generate the first set of next generation sequencing data using the genotyping-by-sequencing technique.
Pingchuan Li, Bill Biligetu, Bruce E. Coulman, Michael Schellenberg, Yong-Bi Fu   +4 more
openaire   +3 more sources

Population genetics of Todarodes pacificus (Cephalopoda: Ommastrephidae) in the northwest Pacific Ocean via GBS sequencing

Open Life Sciences
The common squid, Todarodes pacificus, is an important commercial species that inhabits the northwest Pacific Ocean, particularly the East Japan Sea, the Pacific coast of Japan, and the East China Sea.
Liu Yang, Hu Xingxing, Lu Huajie, Liu Yimeng, Wang Congcong, Dai Xiaojie   +5 more
doaj   +1 more source