Results 11 to 20 of about 33,843 (263)

Rapid Diagnosis of Mycobacterium marinum Infection by Next-Generation Sequencing: A Case Report

Frontiers in Medicine, 2022
We present the first report of histology- and culture-proven Mycobacterium marinum infection diagnosed by next-generation sequencing (NGS). It took <2 days to make a microbiological diagnosis using the Oxford Nanopore Technologies' MinION device ...
Fanfan Xing, Simon K. F. Lo, Yuanchao Ma, Jonathan Daniel Ip, Wan-Mui Chan, Meixun Zhou, Miaozi Gong, Susanna K. P. Lau, Patrick C. Y. Woo   +8 more
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Benchmarking Oxford Nanopore read alignment‐based insertion and deletion detection in crop plant genomes

The Plant Genome, 2023
Structural variations (SVs) are larger polymorphisms (> 50 bp in length), which consist of insertions, deletions, inversions, duplications, and translocations.
Gözde Yildiz, Silvia F. Zanini, Nazanin P. Afsharyan, Christian Obermeier, Rod J. Snowdon, Agnieszka A. Golicz   +5 more
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Rapid diagnosis of fatal Nocardia kroppenstedtii bacteremic pneumonia and empyema thoracis by next-generation sequencing: a case report

Frontiers in Medicine, 2023
Nocardia species do not replicate as rapidly as other pyogenic bacteria and nocardial infections can be highly fatal, particularly in immunocompromised patients.
Fanfan Xing, Yao Xia, Qianyun Lu, Simon K. F. Lo, Susanna K. P. Lau, Patrick C. Y. Woo, Patrick C. Y. Woo, Patrick C. Y. Woo   +7 more
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Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice

Genome Biology, 2020
Background The circum-basmati group of cultivated Asian rice (Oryza sativa) contains many iconic varieties and is widespread in the Indian subcontinent.
Jae Young Choi, Zoe N. Lye, Simon C. Groen, Xiaoguang Dai, Priyesh Rughani, Sophie Zaaijer, Eoghan D. Harrington, Sissel Juul, Michael D. Purugganan   +8 more
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pycoMeth: a toolbox for differential methylation testing from Nanopore methylation calls

Genome Biology, 2023
We present pycoMeth, a toolbox to store, manage and analyze DNA methylation calls from long-read sequencing data obtained using the Oxford Nanopore Technologies sequencing platform.
Rene Snajder, Adrien Leger, Oliver Stegle, Marc Jan Bonder   +3 more
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Chenopodium Oxford Nanopore libraries

, 2022
Oxford Nanopore libraries of four diploid Chenopodium species (2n=2x=18), C. acuminatum, C. iljinii, C. pamiricum and C. suecicum.
Belyayev Alexander
core   +1 more source

A chromosome-level genome assembly of the jade perch (Scortum barcoo)

Scientific Data, 2022
Measurement(s) whole genome sequencing Technology Type(s) Illumina Sequencing • Oxford Nanopore ...
Yishan Lu, Ruihan Li, Liqun Xia, Jun Cheng, Hongli Xia, Qiuyao Zhan, Dapeng Yu, Xinxin You, Ruobo Gu, Junmin Xu, Qiong Shi, Chao Bian   +11 more
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Applications and potentials of nanopore sequencing in the (epi)genome and (epi)transcriptome era

The Innovation, 2021
Summary: The Human Genome Project opened an era of (epi)genomic research, and also provided a platform for the development of new sequencing technologies.
Shangqian Xie, Amy Wing-Sze Leung, Zhenxian Zheng, Dake Zhang, Chuanle Xiao, Ruibang Luo, Ming Luo, Shoudong Zhang   +7 more
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Universal whole-genome Oxford nanopore sequencing of SARS-CoV-2 using tiled amplicons

Scientific Reports, 2023
We developed a comprehensive multiplexed set of primers adapted for the Oxford Nanopore Rapid Barcoding library kit that allows universal SARS-CoV-2 genome sequencing.
Ruslan Kalendar, Ulykbek Kairov, Daniyar Karabayev, Akbota Aitkulova, Nuray Tynyshtykbayeva, Asset Daniyarov, Zhenis Otarbay, Saule Rakhimova, Ainur Akilzhanova, Dos Sarbassov   +9 more
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Crystal structure of an invertebrate cytolysin pore reveals unique properties and mechanism of assembly

Nature Communications, 2016
Pore-forming toxins act by forming oligomeric pores in lipid membranes. Here the authors report the crystal structure of the lysenin pore, providing insights into the assembly and function of the pore in addition to suggesting that its properties make ...
Marjetka Podobnik, Peter Savory, Nejc Rojko, Matic Kisovec, Neil Wood, Richard Hambley, Jonathan Pugh, E. Jayne Wallace, Luke McNeill, Mark Bruce, Idlir Liko, Timothy M. Allison, Shahid Mehmood, Neval Yilmaz, Toshihide Kobayashi, Robert J. C. Gilbert, Carol V. Robinson, Lakmal Jayasinghe, Gregor Anderluh   +18 more
doaj   +1 more source