Results 31 to 40 of about 33,843 (263)
NanoSplicer: accurate identification of splice junctions using Oxford Nanopore sequencing
, 2022 MOTIVATION: Long-read sequencing methods have considerable advantages for characterizing RNA isoforms. Oxford Nanopore sequencing records changes in electrical current when nucleic acid traverses through a pore.
Clark, Michael B +5 more
core +1 more source
IMA Fungus, 2020 We formed the Collection of Zoosporic Eufungi at the University of Michigan (CZEUM) in 2018 as a cryopreserved fungal collection consolidating the University of Maine Culture Collection (UMCC, or JEL), the University of Alabama Chytrid Culture Collection
D. Rabern Simmons +10 more
doaj +1 more source
, 2023 International audienceThe oomycete Phytophthora capsici is a common pathogen of the Solanaceae and Cucurbitaceae families. An improved assembly for the reference isolate LT1534 was constructed using Oxford Nanopore Technologies and Illumina data ...
Lefebvre, Véronique +6 more
core +1 more source
Scientific Data, 2022 Measurement(s) whole genome sequencing Technology Type(s) Illumina NovaSeq. 6000 • Oxford Nanopore Sequencing Sample Characteristic - Organism Phthorimaea operculella Sample Characteristic - Location Yunnan Province, Southwest ...
Mengdi Zhang +11 more
doaj +1 more source
Assessing FOXA1-driven mRNA processing in prostate cancer with Nanopore long-read sequencing
, 2022 Despite advances in the diagnosis and treatment of early stage of prostate cancer (PC), there are few therapeutic options for end-stage metastatic castration-resistant PC.
Matteo Cereda
core
Nature Communications, 2019 DNA modification generates unique electric signals in Oxford Nanopore sequencing data but the signals can be complicated to decipher. Here, the authors develop a deep learning framework, DeepMod, to detect DNA base modifications including 5mC and 6mA ...
Qian Liu +5 more
doaj +1 more source
Transformer‐based DNA methylation detection on ionic signals from Oxford Nanopore sequencing data
Quantitative Biology, 2023 Transformer is an algorithm that adopts self‐attention architecture in the neural networks and has been widely used in natural language processing. In the current study, we apply Transformer architecture to detect DNA methylation on ionic signals from ...
Xiuquan Wang +3 more
doaj +1 more source
Gapless provides combined scaffolding, gap filling, and assembly correction with long reads
Life Science Alliance, 2023 gapless is a new tool for combined execution of correction, scaffolding and gap filling using PacBio or Oxford Nanopore reads. Continuity, correctness, and completeness of genome assemblies are important for many biological projects. Long reads represent
Stephan Schmeing, Mark D Robinson
doaj +1 more source
DNA origami nanopores: an emerging tool in biomedicinet
, 2013 Editorial.The authors acknowledge support from an ERC starting grant and from Oxford Nanopore Technologies® (www.nanoporetech.com).Peer ...
Hernández-Ainsa, Silvia +1 more
core +1 more source
Complementarity of Long‐Reads and Optical Mapping in Parkinson's Disease for Structural Variants
Annals of Clinical and Translational Neurology, EarlyView.ABSTRACT Objective Long‐read sequencing and optical genome mapping technologies have the ability to detect large and complex structural variants. This has led to the discovery of novel pathogenic variants in neurodegenerative movement disorders. Thus, we aimed to systematically compare the SV detection capabilities of OGM and ONT in Parkinson's disease.
André Fienemann +17 more
wiley +1 more source