Results 1 to 10 of about 13,061,283 (181)

GENCODE 2025: reference gene annotation for human and mouse. [PDF]

Nucleic Acids Res
GENCODE produces comprehensive reference gene annotation for human and mouse. Entering its twentieth year, the project remains highly active as new technologies and methodologies allow us to catalog the genome at ever-increasing granularity.
Mudge JM, Carbonell-Sala S, Diekhans M, Martinez JG, Hunt T, Jungreis I, Loveland JE, Arnan C, Barnes I, Bennett R, Berry A, Bignell A, Cerdán-Vélez D, Cochran K, Cortés LT, Davidson C, Donaldson S, Dursun C, Fatima R, Hardy M, Hebbar P, Hollis Z, James BT, Jiang Y, Johnson R, Kaur G, Kay M, Mangan RJ, Maquedano M, Gómez LM, Mathlouthi N, Merritt R, Ni P, Palumbo E, Perteghella T, Pozo F, Raj S, Sisu C, Steed E, Sumathipala D, Suner MM, Uszczynska-Ratajczak B, Wass E, Yang YT, Zhang D, Finn RD, Gerstein M, Guigó R, Hubbard TJP, Kellis M, Kundaje A, Paten B, Tress ML, Birney E, Martin FJ, Frankish A.   +55 more
europepmc   +2 more sources

Reference Gene Selection for Quantitative Gene Expression Analysis in Argynnis hyperbius [PDF]

Insects
Argynnis hyperbius (Lepidoptera: Nymphalidae), as an important environmental indicator species, has shown a gradual decline in its species richness amid intensifying climate change and increasing environmental pressures.
Hong-Juan Xin, Chen-Yang Liu, Feng Yan, Lu-Dan Wang, Huan-Huan Zhang, Chen-Hui Shen, Qing Zhai   +6 more
doaj   +2 more sources

qRT-PCR Reference Gene Selection for the Discoloration of Tender Leaves in Hawk Tea (Litsea coreana) [PDF]

Current Issues in Molecular Biology
To identify stable reference genes for qRT-PCR analysis across different developmental stages and color variations of tender leaves in Litsea coreana, seven candidate reference genes were selected based on existing transcriptome data.
Qianli Dai, Min Lu, Ximeng Yang, Chenggong Lei, Feiyi Huang, Xueping Hu, Xin Huang, Xiaolong Nie, Daojing Chen, Sicheng Huang, Hengxing Zhu   +10 more
doaj   +2 more sources

EF1α and αTUB Are Stable Reference Gene Pairs for RT-qPCR-Based Gene Expression Studies in Salix suchowensis Under Nitrogen Treatment Conditions [PDF]

Plants
Salix suchowensis is an ideal model organism for investigating nitrogen (N) transport mechanisms due to its low N-input requirements. Accurate quantification of gene expression is essential for elucidating these processes, with quantitative real-time PCR
Lei Huang, Yuyi Zhang, Fei Gao, Yu Fu, Jing Sun, Jie Zhou, Jun Tao, Xudong He, Nan Guo   +8 more
doaj   +2 more sources

PPIA, HPRT1, and YWHAZ are suitable reference genes for quantitative polymerase chain reaction assay of the hypothalamic–pituitary–gonadal axis in sows [PDF]

Animal Bioscience, 2022
Objective The quantitative reverse transcription polymerase chain reaction (qPCR) is the most accurate and reliable technique for analysis of gene expression.
Hwan-Deuk Kim, Chan-Hee Jo, Yong-Ho Choe, Hyeon-Jeong Lee, Min Jang, Seul-Gi Bae, Sung-Ho Yun, Sung-Lim Lee, Gyu-Jin Rho, Seung-Joon Kim, Won-Jae Lee   +10 more
doaj   +1 more source

AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence

Scientific Reports, 2021
Antimicrobial resistance (AMR) is a significant public health threat. With the rise of affordable whole genome sequencing, in silico approaches to assessing AMR gene content can be used to detect known resistance mechanisms and potentially identify novel
M. Feldgarden, V. Brover, N. González-Escalona, J. Frye, Julie Haendiges, D. Haft, M. Hoffmann, J. Pettengill, Arjun B. Prasad, G. Tillman, G. Tyson, W. Klimke   +11 more
semanticscholar   +1 more source

iRGvalid: A Robust in silico Method for Optimal Reference Gene Validation

Frontiers in Genetics, 2021
BackgroundAppropriate reference genes are critical to accurately quantifying relative gene expression in research and clinical applications. Numerous efforts have been made to select the most stable reference gene(s), but a consensus has yet to be ...
Zhongxu Zhu, Keqin Gregg, Wenli Zhou
doaj   +1 more source

The Gene Ontology's Reference Genome Project: a unified framework for functional annotation across species. [PDF]

PLoS Computational Biology, 2009
The Gene Ontology (GO) is a collaborative effort that provides structured vocabularies for annotating the molecular function, biological role, and cellular location of gene products in a highly systematic way and in a species-neutral manner with the aim ...
Reference Genome Group of the Gene Ontology Consortium
doaj   +1 more source

A comprehensive HPV-STI NGS assay for detection of 29 HPV types and 14 non-HPV sexually transmitted infections

Infectious Agents and Cancer, 2022
Background Sexually transmitted infections (STIs) are prevalent throughout the world and impose a significant burden on individual health and public health systems.
Zhihai Ma, Baback Gharizadeh, Xingsheng Cai, Mengzhen Li, María Dolores Fellner, Jorge Alejandro Basiletti, Rita Mariel Correa, María Celeste Colucci, Gabriela Baldoni, Martín Vacchino, Patricia Galarza, María Alejandra Picconi, Chunlin Wang   +12 more
doaj   +1 more source

Selection and Validation of Reference Genes for Gene Expression Analysis in Tuta absoluta Meyrick (Lepidoptera: Gelechiidae)

Insects, 2021
The tomato leaf miner, Tuta absoluta is a destructive pest of tomato. The leaf-mining activities of its larvae can cause significant yield losses. Real-time quantitative polymerase chain reaction (RT-qPCR) is commonly used to measure gene expression, and
Xin Yan, Yibo Zhang, Kangkang Xu, Yawei Wang, Wenjia Yang   +4 more
doaj   +1 more source