Results 11 to 20 of about 175,164 (279)
Genotyping-by-Sequencing in Plants
Biology, 2012 The advent of next-generation DNA sequencing (NGS) technologies has led to the development of rapid genome-wide Single Nucleotide Polymorphism (SNP) detection applications in various plant species.
Gregory D. May +2 more
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Adapting Genotyping-by-Sequencing for Rice F2 Populations
G3: Genes, Genomes, Genetics, 2017 Rapid and cost-effective genotyping of large mapping populations can be achieved by sequencing a reduced representation of the genome of every individual in a given population, and using that information to generate genetic markers.
Tomoyuki Furuta +4 more
doaj +3 more sources
Adapting Genotyping-by-Sequencing and Variant Calling for Heterogeneous Stock Rats [PDF]
G3: Genes, Genomes, Genetics, 2020 The heterogeneous stock (HS) is an outbred rat population derived from eight inbred rat strains. HS rats are ideally suited for genome wide association studies; however, only a few genotyping microarrays have ever been designed for rats and none of them ...
Alexander F. Gileta +6 more
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Genotyping-by-Sequencing for Plant Breeding and Genetics
The Plant Genome, 2012 Rapid advances in “next-generation” DNA sequencing technology have brought the US$1000 human () genome within reach while providing the raw sequencing output for researchers to revolutionize the way populations are genotyped.
Jesse A. Poland, Trevor W. Rife
doaj +2 more sources
Genotyping‐by‐sequencing for biogeography
Journal of Biogeography, 2022 AbstractAimGenotyping‐by‐sequencing (GBS) and similar reduced‐representation sequencing methods, such as restriction site‐associated DNA sequencing (RADseq), have been revolutionary for genetic analyses in biogeography. However, navigating the many different methodological and analytical approaches and numerous sources of potential error can be ...
Felix Vaux +3 more
openaire +1 more source
Parentage assignment with genotyping-by-sequencing data [PDF]
Journal of Animal Breeding and Genetics, 2018 AbstractIn this paper we evaluate using genotype-by-sequencing (GBS) data to perform parentage assignment in lieu of traditional array data. The use of GBS data raises two issues: First, for low-coverage GBS data, it may not be possible to call the genotype at many loci, a critical first step for detecting opposing homozygous markers.
Andrew Whalen +2 more
openaire +3 more sources
Oil Crop Science, 2020 Broomrape (Orobanche cumana) is one of the most important parasitic plants that drastically reduces sunflower yield. The majority of existing resistance varieties have become insufficient for crop protection. Breeding for broomrape resistance is regarded
Shengli Liu +3 more
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Characterization of the USDA Cucurbita pepo, C. moschata, and C. maxima germplasm collections
Frontiers in Plant Science, 2023 The Cucurbita genus is home to a number of economically and culturally important species. We present the analysis of genotype data generated through genotyping-by-sequencing of the USDA germplasm collections of Cucurbita pepo, C. moschata, and C. maxima.
Christopher O. Hernandez +8 more
doaj +1 more source
Animals, 2023 Developing sound breeding programs for aquaculture species may be challenging when matings cannot be controlled due to communal spawning. We developed a genotyping-by-sequencing marker panel of 300 SNPs for parentage testing and sex determination by ...
Víctor Martinez +2 more
doaj +1 more source
Genotyping‐by‐sequencing resolves relationships in Polygonaceae tribe Eriogoneae [PDF]
TAXON, 2021 AbstractThe resolution of cryptic diversity is essential for understanding the evolutionary diversification of lineages and establishing conservation priorities. We examine relationships in Eriogoneae (Polygonaceae), a diverse lineage in western North America.
Peter B. Pearman +3 more
openaire +3 more sources