Results 11 to 20 of about 286,243 (197)
omicR: A tool to facilitate BLASTn alignments for sequence data
SoftwareX, 2021 Bioinformatics tools for the analysis of sequencing data, are becoming accessible for most scientists. Beginners who are unfamiliar to these tools can be overwhelmed when learning to handle large sequencing datasets.
Berenice Talamantes-Becerra +2 more
doaj +1 more source
Genotyping‐by‐sequencing for biogeography
Journal of Biogeography, 2022 AbstractAimGenotyping‐by‐sequencing (GBS) and similar reduced‐representation sequencing methods, such as restriction site‐associated DNA sequencing (RADseq), have been revolutionary for genetic analyses in biogeography. However, navigating the many different methodological and analytical approaches and numerous sources of potential error can be ...
Felix Vaux +3 more
openaire +1 more source
A Novel Genome-Wide Association Study Approach Using Genotyping by Exome Sequencing Leads to the Identification of a Primary Open Angle Glaucoma Associated Inversion Disrupting ADAMTS17 [PDF]
, 2015 Closed breeding populations in the dog in conjunction with advances in gene mapping and sequencing techniques facilitate mapping of autosomal recessive diseases and identification of novel disease-causing variants, often using unorthodox experimental ...
A McKenna +27 more
core +7 more sources
NanoGBS: A Miniaturized Procedure for GBS Library Preparation
Frontiers in Genetics, 2020 High-throughput reduced-representation sequencing (RRS)-based genotyping methods, such as genotyping-by-sequencing (GBS), have provided attractive genotyping solutions in numerous species.
Davoud Torkamaneh +7 more
doaj +1 more source
New Genotypes and Genomic Regions for Resistance to Wheat Blast in South Asian Germplasm
Plants, 2021 Wheat blast (WB) disease, since its first identification in Bangladesh in 2016, is now an established serious threat to wheat production in South Asia. There is a need for sound knowledge about resistance sources and associated genomic regions to assist ...
Chandan Roy +10 more
doaj +1 more source
Genotyping-by-sequencing enables linkage mapping in three octoploid cultivated strawberry families [PDF]
PeerJ, 2017 Genotyping-by-sequencing (GBS) was used to survey genome-wide single-nucleotide polymorphisms (SNPs) in three biparental strawberry (Fragaria × ananassa) populations with the goal of evaluating this technique in a species with a complex octoploid genome.
Kelly J. Vining +6 more
doaj +2 more sources
Parentage assignment with genotyping-by-sequencing data [PDF]
Journal of Animal Breeding and Genetics, 2018 AbstractIn this paper we evaluate using genotype-by-sequencing (GBS) data to perform parentage assignment in lieu of traditional array data. The use of GBS data raises two issues: First, for low-coverage GBS data, it may not be possible to call the genotype at many loci, a critical first step for detecting opposing homozygous markers.
Andrew Whalen +2 more
openaire +3 more sources
Oil Crop Science, 2020 Broomrape (Orobanche cumana) is one of the most important parasitic plants that drastically reduces sunflower yield. The majority of existing resistance varieties have become insufficient for crop protection. Breeding for broomrape resistance is regarded
Shengli Liu +3 more
doaj +1 more source
Characterization of the USDA Cucurbita pepo, C. moschata, and C. maxima germplasm collections
Frontiers in Plant Science, 2023 The Cucurbita genus is home to a number of economically and culturally important species. We present the analysis of genotype data generated through genotyping-by-sequencing of the USDA germplasm collections of Cucurbita pepo, C. moschata, and C. maxima.
Christopher O. Hernandez +8 more
doaj +1 more source
Animals, 2023 Developing sound breeding programs for aquaculture species may be challenging when matings cannot be controlled due to communal spawning. We developed a genotyping-by-sequencing marker panel of 300 SNPs for parentage testing and sex determination by ...
Víctor Martinez +2 more
doaj +1 more source