Gut microbiome profiling of neonates using Nanopore MinION and Illumina MiSeq sequencing [PDF]
Frontiers in Microbiology, 2023 This study aimed to evaluate the difference in gut microbiomes between preterm and term infants using third-generation long-read sequencing (Oxford Nanopore Technologies, ONT) compared with an established gold standard, Illumina (second-generation short ...
Teahyen Cha +8 more
doaj +4 more sources
Illumina MiSeq sequencing analysis of fungal diversity in stored dates [PDF]
BMC Microbiology, 2017 Background Date palm has been a major fruit tree in the Middle East over thousands of years, especially in the Arabian Peninsula. Dates are consumed fresh (Rutab) or after partial drying and storage (Tamar) during off-season.
Ismail M. Al-Bulushi +4 more
doaj +5 more sources
Illumina MiSeq Sequencing for Preliminary Analysis of Microbiome Causing Primary Endodontic Infections in Egypt [PDF]
International Journal of Microbiology, 2018 The use of high throughput next generation technologies has allowed more comprehensive analysis than traditional Sanger sequencing. The specific aim of this study was to investigate the microbial diversity of primary endodontic infections using Illumina ...
Sally Ali Tawfik +3 more
doaj +5 more sources
Assessment of seawater bacterial infection in rabbit tibia by Illumina MiSeq sequencing and bacterial culture [PDF]
Journal of Orthopaedic Surgery and Research, 2021 Objectives We aimed to explore the bacterial community composition following ocean bacterial infection using an animal model. Methods This animal-based experiment was conducted from September 2019 to November 2019. Eighteen seawater filter membranes were
Du Wang +6 more
doaj +5 more sources
Comparison of Oxford Nanopore Technologies and Illumina MiSeq sequencing with mock communities and agricultural soil [PDF]
Scientific Reports, 2023 Illumina MiSeq is the current standard for characterizing microbial communities in soil. The newer alternative, Oxford Nanopore Technologies MinION sequencer, is quickly gaining popularity because of the low initial cost and longer sequence reads ...
Bo Maxwell Stevens +3 more
doaj +4 more sources
Saliva microbiome profiling by full-gene 16S rRNA Oxford Nanopore Technology versus Illumina MiSeq sequencing [PDF]
npj Biofilms and MicrobiomesMolecular characterization of the oral microbiome is a crucial first step in experiments which aim to understand the complex dynamics of the oral microbiome or the interplay with host health and disease.
Anders Esberg +3 more
doaj +6 more sources
Insights into bacterioplankton community structure from Sundarbans mangrove ecoregion using Sanger and Illumina MiSeq sequencing approaches: A comparative analysis [PDF]
Genomics Data, 2017 Next generation sequencing using platforms such as Illumina MiSeq provides a deeper insight into the structure and function of bacterioplankton communities in coastal ecosystems compared to traditional molecular techniques such as clone library approach ...
Anwesha Ghosh, Punyasloke Bhadury
doaj +2 more sources
A bumpy ride on the diagnostic bench of massive parallel sequencing, the case of the mitochondrial genome [PDF]
, 2014 The advent of massive parallel sequencing (MPS) has revolutionized the field of human molecular genetics, including the diagnostic study of mitochondrial (mt) DNA dysfunction.
Caljon, Ben +11 more
core +21 more sources
Effects of wheat root exudates on bacterial communities in the rhizosphere of watermelon
Plant, Soil and Environment, 2021 In this study, we investigated the effects of wheat root exudates on soil bacterial communities in the watermelon rhizosphere using quantitative PCR and Illumina MiSeq sequencing.
Jibo Shi +5 more
doaj +1 more source
Scientific Reports, 2022 Well-defined molecular resistance markers are available for a range of antimalarial drugs, and molecular surveillance is increasingly important for monitoring antimalarial drug resistance.
Chanon Kunasol +6 more
doaj +1 more source