Results 61 to 70 of about 133,775 (185)

Datasets of surface water microbial populations from two anthropogenically impacted sites on the Bhagirathi-Hooghly River

Data in Brief, 2020
The Bhagirathi-Hooghly River, part of the River Ganga, flows along densely urbanized areas in West Bengal, India. The River water is extensively used for household activities, human consumption including bathing, social purposes and multifaceted ...
Anwesha Ghosh, Manojit Debnath, Punyasloke Bhadury   +2 more
doaj   +1 more source

Microbial Community of Tannery Wastewater Involved in Nitrification Revealed by Illumina MiSeq Sequencing

Journal of Microbiology and Biotechnology, 2018
The aim of this study was to investigate the microbial community of three tannery wastewater treatment plants (WWTPs) involved in nitrification by Illumina MiSeq sequencing. The results showed that highly diverse communities were present in tannery wastewater.
Xiaojian, Ma, Chongde, Wu, Jun, Huang, Rongqing, Zhou, Bi, Shi   +4 more
openaire   +3 more sources

Microbial communities and arsenic biogeochemistry at the outflow of an alkaline sulfide-rich hot spring. [PDF]

, 2016
Alkaline sulfide-rich hot springs provide a unique environment for microbial community and arsenic (As) biogeochemistry. In this study, a representative alkaline sulfide-rich hot spring, Zimeiquan in the Tengchong geothermal area, was chosen to study ...
Dai, Xinyue, Jiang, Dawei, Jiang, Zhou, Li, Ping, Van Nostrand, Joy D, Wang, Yanhong, Wang, Yanxin, Zhang, Ping, Zhang, Rui, Zhou, Jizhong   +9 more
core   +1 more source

Mycobiome Analysis of Tall Fescue Grass Under Drought Stress Using the Illumina MiSeq and Oxford Nanopore Technology MinION

Phytobiomes Journal, 2023
The effects that mycobiomes have on physiological traits in turfgrasses are poorly understood. Drought tolerance, an economically and ecologically important trait, can be influenced by symbiotic fungi.
Glen Groben, Bruce B. Clarke, Lee J. Kerkhof, Stacy A. Bonos, William A. Meyer, Yuanshuo Qu, Jing Luo, Emily Walsh, Ning Zhang   +8 more
doaj   +1 more source

Assessing the Gene Content of the Megagenome: Sugar Pine (Pinus lambertiana). [PDF]

, 2016
Sugar pine (Pinus lambertiana Douglas) is within the subgenus Strobus with an estimated genome size of 31 Gbp. Transcriptomic resources are of particular interest in conifers due to the challenges presented in their megagenomes for gene identification ...
Delfino-Mix, Annette, Famula, Randi A, Gonzalez-Ibeas, Daniel, Langley, Charles H, Loopstra, Carol A, Martinez-Garcia, Pedro J, Neale, David B, Stevens, Kristian A, Wegrzyn, Jill L   +8 more
core   +2 more sources

Full genome virus detection in fecal samples using sensitive nucleic acid preparation, deep sequencing, and a novel iterative sequence classification algorithm.

PLoS ONE, 2014
We have developed a full genome virus detection process that combines sensitive nucleic acid preparation optimised for virus identification in fecal material with Illumina MiSeq sequencing and a novel post-sequencing virus identification algorithm ...
Matthew Cotten, Bas Oude Munnink, Marta Canuti, Martin Deijs, Simon J Watson, Paul Kellam, Lia van der Hoek   +6 more
doaj   +1 more source

Enterobacter bugandensis: a novel enterobacterial species associated with severe clinical infection [PDF]

, 2018
Nosocomial pathogens can cause life-threatening infections in neonates and immunocompromised patients. E. bugandensis (EB-247) is a recently described species of Enterobacter, associated with neonatal sepsis.
Bunk, Boyke, Chakraborty, Trinad, Doijad, Swapnil Prakash, Falgenhauer, Linda, Goesmann, Alexander, Gwozdzinski, Konrad, Hain, Torsten, Hegemann, Julian D., Imirzalioglu, Can, Jaiswal, Sangeeta, Mannala, Gopala Krishna, Marahiel, Mohamed A., Mraheil, Mobarak Abu, Mshana, Stephen E., Overmann, Jörg, Pati, Niladri Bhusan, Ryan, Daniel, Schultze, Tilman, Spröer, Cathrin, Suar, Mrutyunjay, Yao, Yancheng   +20 more
core   +2 more sources

Differences in microbiota between two multilocus lineages of the sugarcane Aphid (Melanaphis sacchari) in the continental United States [PDF]

, 2020
The sugarcane aphid (SCA), Melanaphis Sacchari (Zehntner) (Hemiptera: Aphididae), has been considered an invasive pest of sugarcane in the continental United States since 1977. Then, in 2013, SCA abruptly became a serious pest of U.S.
Antwi, Josephine B., Armstrong, John Scott, Costet, Laurent, Holt, Jocelyn R., Malacrinò, Antonino, McLaren, Neal, Medina, Raul F., Nibouche, Samuel, Peterson, Garry, Styer, Alex, White, Jennifer A., Wulff, Jason   +11 more
core   +1 more source

Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing

BMC Genomics, 2019
Background Short-read sequencing technologies have made microbial genome sequencing cheap and accessible. However, closing genomes is often costly and assembling short reads from genomes that are repetitive and/or have extreme %GC content remains ...
Sarah Goldstein, Lidia Beka, Joerg Graf, Jonathan L. Klassen   +3 more
doaj   +1 more source

Dietary Uncoupling of Gut Microbiota and Energy Harvesting from Obesity and Glucose Tolerance in Mice [PDF]

, 2017
The authors gratefully acknowledge Doctoral Training Partnership funding from the BBSRC (M.J.D.) and funding from the Scottish Government (P.J.M., A.W.R., and A.W.W.).
Dalby, Matthew J., Morgan, Peter J., Ross, Alexander W., Walker, Alan W.   +3 more
core   +2 more sources